Bayesian Calculator estimating an interval or a credible region using the Markov-Chain Monte Carlo method to integrate the likelihood function with the prior to obtain the posterior function.
By using the Markov-Chain Monte Carlo methods this calculator can work with model which require the integration of a large number of parameters.
MCMCCalculator is a concrete implementation of IntervalCalculator. It uses a MetropolisHastings object to construct a Markov Chain of data points in the parameter space. From this Markov Chain, this class can generate a MCMCInterval as per user specification.
The interface allows one to pass the model, data, and parameters via a workspace and then specify them with names.
After configuring the calculator, one only needs to ask GetInterval(), which will return an ConfInterval (MCMCInterval in this case).
Definition at line 31 of file MCMCCalculator.h.
Public Types | |
| enum | { kSingleKey = (1ULL << (0)) , kOverwrite = (1ULL << (1)) , kWriteDelete = (1ULL << (2)) } |
| enum | { kIsOnHeap = 0x01000000 , kNotDeleted = 0x02000000 , kZombie = 0x04000000 , kInconsistent = 0x08000000 , kBitMask = 0x00ffffff } |
| enum | EDeprecatedStatusBits { kObjInCanvas = (1ULL << (3)) } |
| enum | EStatusBits { kCanDelete = (1ULL << (0)) , kMustCleanup = (1ULL << (3)) , kIsReferenced = (1ULL << (4)) , kHasUUID = (1ULL << (5)) , kCannotPick = (1ULL << (6)) , kNoContextMenu = (1ULL << (8)) , kInvalidObject = (1ULL << (13)) } |
Public Member Functions | |
| MCMCCalculator () | |
| default constructor | |
| MCMCCalculator (RooAbsData &data, const ModelConfig &model) | |
| Constructor for automatic configuration with basic settings and a ModelConfig. | |
| void | AbstractMethod (const char *method) const |
| Call this function within a function that you don't want to define as purely virtual, in order not to force all users deriving from that class to implement that maybe (on their side) unused function; but at the same time, emit a run-time warning if they try to call it, telling that it is not implemented in the derived class: action must thus be taken on the user side to override it. | |
| virtual void | AppendPad (Option_t *option="") |
| Append graphics object to current pad. | |
| virtual void | Browse (TBrowser *b) |
| Browse object. May be overridden for another default action. | |
| ULong_t | CheckedHash () |
| Check and record whether this class has a consistent Hash/RecursiveRemove setup (*) and then return the regular Hash value for this object. | |
| virtual const char * | ClassName () const |
| Returns name of class to which the object belongs. | |
| void | Clear (Option_t *option="") override |
| Set name and title to empty strings (""). | |
| TObject * | Clone (const char *newname="") const override |
| Make a clone of an object using the Streamer facility. | |
| Int_t | Compare (const TObject *obj) const override |
| Compare two TNamed objects. | |
| double | ConfidenceLevel () const override |
| Get the Confidence level for the test. | |
| void | Copy (TObject &named) const override |
| Copy this to obj. | |
| virtual void | Delete (Option_t *option="") |
| Delete this object. | |
| virtual Int_t | DistancetoPrimitive (Int_t px, Int_t py) |
| Computes distance from point (px,py) to the object. | |
| virtual void | Draw (Option_t *option="") |
| Default Draw method for all objects. | |
| virtual void | DrawClass () const |
| Draw class inheritance tree of the class to which this object belongs. | |
| virtual TObject * | DrawClone (Option_t *option="") const |
| Draw a clone of this object in the current selected pad with: gROOT->SetSelectedPad(c1). | |
| virtual void | Dump () const |
| Dump contents of object on stdout. | |
| virtual void | Error (const char *method, const char *msgfmt,...) const |
| Issue error message. | |
| virtual void | Execute (const char *method, const char *params, Int_t *error=nullptr) |
| Execute method on this object with the given parameter string, e.g. | |
| virtual void | Execute (TMethod *method, TObjArray *params, Int_t *error=nullptr) |
| Execute method on this object with parameters stored in the TObjArray. | |
| virtual void | ExecuteEvent (Int_t event, Int_t px, Int_t py) |
| Execute action corresponding to an event at (px,py). | |
| virtual void | Fatal (const char *method, const char *msgfmt,...) const |
| Issue fatal error message. | |
| virtual void | FillBuffer (char *&buffer) |
| Encode TNamed into output buffer. | |
| virtual TObject * | FindObject (const char *name) const |
| Must be redefined in derived classes. | |
| virtual TObject * | FindObject (const TObject *obj) const |
| Must be redefined in derived classes. | |
| virtual Option_t * | GetDrawOption () const |
| Get option used by the graphics system to draw this object. | |
| virtual const char * | GetIconName () const |
| Returns mime type name of object. | |
| MCMCInterval * | GetInterval () const override |
| Main interface to get a ConfInterval. | |
| const char * | GetName () const override |
| Returns name of object. | |
| virtual char * | GetObjectInfo (Int_t px, Int_t py) const |
| Returns string containing info about the object at position (px,py). | |
| virtual Option_t * | GetOption () const |
| const char * | GetTitle () const override |
| Returns title of object. | |
| virtual UInt_t | GetUniqueID () const |
| Return the unique object id. | |
| virtual Bool_t | HandleTimer (TTimer *timer) |
| Execute action in response of a timer timing out. | |
| ULong_t | Hash () const override |
| Return hash value for this object. | |
| Bool_t | HasInconsistentHash () const |
| Return true is the type of this object is known to have an inconsistent setup for Hash and RecursiveRemove (i.e. | |
| virtual void | Info (const char *method, const char *msgfmt,...) const |
| Issue info message. | |
| virtual Bool_t | InheritsFrom (const char *classname) const |
| Returns kTRUE if object inherits from class "classname". | |
| virtual Bool_t | InheritsFrom (const TClass *cl) const |
| Returns kTRUE if object inherits from TClass cl. | |
| virtual void | Inspect () const |
| Dump contents of this object in a graphics canvas. | |
| void | InvertBit (UInt_t f) |
| TClass * | IsA () const override |
| Bool_t | IsDestructed () const |
| IsDestructed. | |
| virtual Bool_t | IsEqual (const TObject *obj) const |
| Default equal comparison (objects are equal if they have the same address in memory). | |
| virtual Bool_t | IsFolder () const |
| Returns kTRUE in case object contains browsable objects (like containers or lists of other objects). | |
| Bool_t | IsOnHeap () const |
| Bool_t | IsSortable () const override |
| Bool_t | IsZombie () const |
| void | ls (Option_t *option="") const override |
| List TNamed name and title. | |
| void | MayNotUse (const char *method) const |
| Use this method to signal that a method (defined in a base class) may not be called in a derived class (in principle against good design since a child class should not provide less functionality than its parent, however, sometimes it is necessary). | |
| virtual Bool_t | Notify () |
| This method must be overridden to handle object notification (the base implementation is no-op). | |
| void | Obsolete (const char *method, const char *asOfVers, const char *removedFromVers) const |
| Use this method to declare a method obsolete. | |
| void | operator delete (void *, size_t) |
| Operator delete for sized deallocation. | |
| void | operator delete (void *ptr) |
| Operator delete. | |
| void | operator delete (void *ptr, void *vp) |
| Only called by placement new when throwing an exception. | |
| void | operator delete[] (void *, size_t) |
| Operator delete [] for sized deallocation. | |
| void | operator delete[] (void *ptr) |
| Operator delete []. | |
| void | operator delete[] (void *ptr, void *vp) |
| Only called by placement new[] when throwing an exception. | |
| void * | operator new (size_t sz) |
| void * | operator new (size_t sz, void *vp) |
| void * | operator new[] (size_t sz) |
| void * | operator new[] (size_t sz, void *vp) |
| virtual void | Paint (Option_t *option="") |
| This method must be overridden if a class wants to paint itself. | |
| virtual void | Pop () |
| Pop on object drawn in a pad to the top of the display list. | |
| void | Print (Option_t *option="") const override |
| Print TNamed name and title. | |
| virtual Int_t | Read (const char *name) |
| Read contents of object with specified name from the current directory. | |
| virtual void | RecursiveRemove (TObject *obj) |
| Recursively remove this object from a list. | |
| void | ResetBit (UInt_t f) |
| virtual void | SaveAs (const char *filename="", Option_t *option="") const |
| Save this object in the file specified by filename. | |
| virtual void | SavePrimitive (std::ostream &out, Option_t *option="") |
| Save a primitive as a C++ statement(s) on output stream "out". | |
| virtual void | SetAxes (RooArgList &axes) |
| set which variables to put on each axis | |
| void | SetBit (UInt_t f) |
| void | SetBit (UInt_t f, Bool_t set) |
| Set or unset the user status bits as specified in f. | |
| virtual void | SetChainParameters (const RooArgSet &set) |
| specify the parameters to store in the Markov chain By default all the parameters are stored | |
| virtual void | SetConditionalObservables (const RooArgSet &set) |
| set the conditional observables which will be used when creating the NLL so the pdf's will not be normalized on the conditional observables when computing the NLL | |
| void | SetConfidenceLevel (double cl) override |
| set the confidence level for the interval (eg. 0.95 for a 95% Confidence Interval) | |
| void | SetData (RooAbsData &data) override |
| Set the DataSet if not already there. | |
| virtual void | SetDrawOption (Option_t *option="") |
| Set drawing option for object. | |
| virtual void | SetGlobalObservables (const RooArgSet &set) |
| set the global observables which will be used when creating the NLL so the constraint pdf's will be normalized correctly on the global observables when computing the NLL | |
| virtual void | SetIntervalType (enum MCMCInterval::IntervalType intervalType) |
| set what type of interval to have the MCMCInterval represent | |
| virtual void | SetKeysConfidenceAccuracy (double epsilon) |
| Set the left side tail fraction. | |
| virtual void | SetKeysTerminationThreshold (double delta) |
| When the shortest interval using Keys PDF could not be found to have the desired confidence level +/- the accuracy (see SetKeysConfidenceAccuracy()), the interval determination algorithm will have to terminate with an unsatisfactory confidence level when the bottom and top of the cutoff search range are very close to being equal. | |
| void | SetModel (const ModelConfig &model) override |
| Set the Model. | |
| virtual void | SetName (const char *name) |
| Set the name of the TNamed. | |
| virtual void | SetNameTitle (const char *name, const char *title) |
| Set all the TNamed parameters (name and title). | |
| virtual void | SetNuisanceParameters (const RooArgSet &set) |
| specify the nuisance parameters (eg. the rest of the parameters) | |
| virtual void | SetNumBins (Int_t numBins) |
| set the number of bins to create for each axis when constructing the interval | |
| virtual void | SetNumBurnInSteps (Int_t numBurnInSteps) |
| set the number of steps in the chain to discard as burn-in, starting from the first | |
| virtual void | SetNumIters (Int_t numIters) |
| set the number of iterations to run the metropolis algorithm | |
| virtual void | SetParameters (const RooArgSet &set) |
| specify the parameters of interest in the interval | |
| virtual void | SetPdf (RooAbsPdf &pdf) |
| Set the Pdf if not already there. | |
| virtual void | SetPriorPdf (RooAbsPdf &pdf) |
| Set the Prior Pdf if not already there. | |
| virtual void | SetProposalFunction (ProposalFunction &proposalFunction) |
| set the proposal function for suggesting new points for the MCMC | |
| void | SetTestSize (double size) override |
| set the size of the test (rate of Type I error) ( Eg. 0.05 for a 95% Confidence Interval) | |
| virtual void | SetTitle (const char *title="") |
| Set the title of the TNamed. | |
| virtual void | SetUniqueID (UInt_t uid) |
| Set the unique object id. | |
| virtual void | SetUseKeys (bool useKeys) |
| set whether to use kernel estimation to determine the interval | |
| virtual void | SetUseSparseHist (bool useSparseHist) |
| set whether to use sparse histogram (if using histogram at all) | |
| double | Size () const override |
| Get the size of the test (eg. rate of Type I error). | |
| virtual Int_t | Sizeof () const |
| Return size of the TNamed part of the TObject. | |
| void | Streamer (TBuffer &) override |
| void | StreamerNVirtual (TBuffer &ClassDef_StreamerNVirtual_b) |
| virtual void | SysError (const char *method, const char *msgfmt,...) const |
| Issue system error message. | |
| Bool_t | TestBit (UInt_t f) const |
| Int_t | TestBits (UInt_t f) const |
| virtual void | UseCurrentStyle () |
| Set current style settings in this object This function is called when either TCanvas::UseCurrentStyle or TROOT::ForceStyle have been invoked. | |
| virtual void | Warning (const char *method, const char *msgfmt,...) const |
| Issue warning message. | |
| virtual Int_t | Write (const char *name=nullptr, Int_t option=0, Int_t bufsize=0) |
| Write this object to the current directory. | |
| virtual Int_t | Write (const char *name=nullptr, Int_t option=0, Int_t bufsize=0) const |
| Write this object to the current directory. | |
Static Public Member Functions | |
| static TClass * | Class () |
| static const char * | Class_Name () |
| static constexpr Version_t | Class_Version () |
| static const char * | DeclFileName () |
| static Longptr_t | GetDtorOnly () |
| Return destructor only flag. | |
| static Bool_t | GetObjectStat () |
| Get status of object stat flag. | |
| static void | SetDtorOnly (void *obj) |
| Set destructor only flag. | |
| static void | SetObjectStat (Bool_t stat) |
| Turn on/off tracking of objects in the TObjectTable. | |
Protected Types | |
| enum | { kOnlyPrepStep = (1ULL << (3)) } |
Protected Member Functions | |
| virtual void | DoError (int level, const char *location, const char *fmt, va_list va) const |
| Interface to ErrorHandler (protected). | |
| void | MakeZombie () |
| void | SavePrimitiveNameTitle (std::ostream &out, const char *variable_name) |
| Save object name and title into the output stream "out". | |
| void | SetBins (const RooAbsCollection &coll, Int_t numBins) const |
| void | SetupBasicUsage () |
| Constructor for automatic configuration with basic settings. | |
Static Protected Member Functions | |
| static void | SavePrimitiveConstructor (std::ostream &out, TClass *cl, const char *variable_name, const char *constructor_agrs="", Bool_t empty_line=kTRUE) |
| Save object constructor in the output stream "out". | |
| static void | SavePrimitiveDraw (std::ostream &out, const char *variable_name, Option_t *option=nullptr) |
| Save invocation of primitive Draw() method Skipped if option contains "nodraw" string. | |
| static TString | SavePrimitiveVector (std::ostream &out, const char *prefix, Int_t len, Double_t *arr, Int_t flag=0) |
| Save array in the output stream "out" as vector. | |
Protected Attributes | |
| RooArgList * | fAxes |
| which variables to put on each axis | |
| RooArgSet | fChainParams |
| parameters to store in the chain (if not specified they are all of them ) | |
| RooArgSet | fConditionalObs |
| conditional observables | |
| RooAbsData * | fData |
| pointer to the data (owned by the workspace) | |
| double | fDelta = -1 |
| acceptable error for Keys cutoffs being equal topCutoff (a) considered == bottomCutoff (b) iff (std::abs(a - b) < std::abs(fDelta * (a + b)/2)); Theoretically, the Abs is not needed here, but floating-point arithmetic does not always work perfectly, and the Abs doesn't hurt | |
| double | fEpsilon = -1 |
| acceptable error for Keys interval determination | |
| RooArgSet | fGlobalObs |
| global observables | |
| enum MCMCInterval::IntervalType | fIntervalType = MCMCInterval::kShortest |
| double | fLeftSideTF = -1 |
| left side tail-fraction for interval | |
| TString | fName |
| RooArgSet | fNuisParams |
| nuisance parameters for interval (not really used) | |
| Int_t | fNumBins = 0 |
| set the number of bins to create for each axis when constructing the interval | |
| Int_t | fNumBurnInSteps = 0 |
| number of iterations to discard as burn-in, starting from the first | |
| Int_t | fNumIters = 0 |
| number of iterations to run metropolis algorithm | |
| RooAbsPdf * | fPdf |
| pointer to common PDF (owned by the workspace) | |
| RooArgSet | fPOI |
| parameters of interest for interval | |
| RooAbsPdf * | fPriorPdf |
| pointer to prior PDF (owned by the workspace) | |
| ProposalFunction * | fPropFunc |
| Proposal function for MCMC integration. | |
| double | fSize = -1 |
| size of the test (eg. specified rate of Type I error) | |
| TString | fTitle |
| bool | fUseKeys = false |
| whether to use kernel estimation to determine interval | |
| bool | fUseSparseHist = false |
| whether to use sparse histogram (if using hist at all) | |
Static Private Member Functions | |
| static void | AddToTObjectTable (TObject *) |
| Private helper function which will dispatch to TObjectTable::AddObj. | |
Private Attributes | |
| UInt_t | fBits |
| bit field status word | |
| UInt_t | fUniqueID |
| object unique identifier | |
Static Private Attributes | |
| static Longptr_t | fgDtorOnly = 0 |
| object for which to call dtor only (i.e. no delete) | |
| static Bool_t | fgObjectStat = kTRUE |
| if true keep track of objects in TObjectTable | |
#include <RooStats/MCMCCalculator.h>
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protectedinherited |
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inherited |
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inherited |
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inherited |
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inherited |
| MCMCCalculator::MCMCCalculator | ( | ) |
default constructor
Definition at line 58 of file MCMCCalculator.cxx.
| MCMCCalculator::MCMCCalculator | ( | RooAbsData & | data, |
| const ModelConfig & | model ) |
Constructor for automatic configuration with basic settings and a ModelConfig.
constructor from a Model Config with a basic settings package configured by SetupBasicUsage()
Uses a UniformProposal, 10,000 iterations, 40 burn in steps, 50 bins for each RooRealVar, determines interval by histogram, and finds a 95% confidence interval. Any of these basic settings can be overridden by calling one of the Set...() methods.
Definition at line 71 of file MCMCCalculator.cxx.
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inherited |
Call this function within a function that you don't want to define as purely virtual, in order not to force all users deriving from that class to implement that maybe (on their side) unused function; but at the same time, emit a run-time warning if they try to call it, telling that it is not implemented in the derived class: action must thus be taken on the user side to override it.
In other word, this method acts as a "runtime purely virtual" warning instead of a "compiler purely virtual" error.
Definition at line 1149 of file TObject.cxx.
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staticprivateinherited |
Private helper function which will dispatch to TObjectTable::AddObj.
Included here to avoid circular dependency between header files.
Definition at line 195 of file TObject.cxx.
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virtualinherited |
Append graphics object to current pad.
In case no current pad is set yet, create a default canvas with the name "c1".
Definition at line 204 of file TObject.cxx.
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virtualinherited |
Browse object. May be overridden for another default action.
Reimplemented in RooPlot, ROOT::Experimental::XRooFit::xRooNode, ROOT::Internal::THnBaseBrowsable, TApplicationRemote, TASImage, TAxis3D, TBaseClass, TBranch, TBranchClones, TBranchElement, TBranchObject, TBranchSTL, TBrowserObject, TCanvas, TChain, TClass, TCollection, TCollectionPropertyBrowsable, TDatabasePDG, TDirectory, TDirectoryFile, TEfficiency, TF1, TFolder, TGenerator, TGeoManager, TGeometry, TGeoNode, TGeoOverlap, TGeoTrack, TGeoVolume, TGraph2D, TGraph, TH1, THbookBranch, THbookFile, THbookKey, THnBase, THStack, TKey, TKeyMapFile, TLeaf, TMacro, TMapFile, TMultiDimFit, TMultiGraph, TNode, TNtuple, TNtupleD, TPad, TPair, TParticleClassPDG, TPrincipal, TRecorder, TRemoteObject, TROOT, TRootIconList, TSPlot, TStyle, TSystemDirectory, TSystemFile, TTask, TTree, TTreePerfStats, and TVirtualBranchBrowsable.
Definition at line 218 of file TObject.cxx.
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inlineinherited |
Check and record whether this class has a consistent Hash/RecursiveRemove setup (*) and then return the regular Hash value for this object.
The intent is for this routine to be called instead of directly calling the function Hash during "insert" operations. See TObject::HasInconsistenTObjectHash();
(*) The setup is consistent when all classes in the class hierarchy that overload TObject::Hash do call ROOT::CallRecursiveRemoveIfNeeded in their destructor. i.e. it is safe to call the Hash virtual function during the RecursiveRemove operation.
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static |
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inlinestaticconstexpr |
Definition at line 204 of file MCMCCalculator.h.
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virtualinherited |
Returns name of class to which the object belongs.
Definition at line 227 of file TObject.cxx.
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overridevirtualinherited |
Set name and title to empty strings ("").
Reimplemented from TObject.
Reimplemented in TPrincipal, TProcessID, TStreamerInfo, TTask, TVirtualFitter, and TVirtualStreamerInfo.
Definition at line 63 of file TNamed.cxx.
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overridevirtualinherited |
Make a clone of an object using the Streamer facility.
If newname is specified, this will be the name of the new object.
Reimplemented from TObject.
Reimplemented in TStreamerInfo, and TTreeIndex.
Definition at line 73 of file TNamed.cxx.
Compare two TNamed objects.
Returns 0 when equal, -1 when this is smaller and +1 when bigger (like strcmp).
Reimplemented from TObject.
Reimplemented in TStructNodeProperty.
Definition at line 84 of file TNamed.cxx.
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inlineoverridevirtual |
Get the Confidence level for the test.
Implements RooStats::IntervalCalculator.
Definition at line 50 of file MCMCCalculator.h.
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overridevirtualinherited |
Copy this to obj.
Reimplemented from TObject.
Reimplemented in TPieSlice, TProfile2D, TProfile3D, TProfile, TStyle, TSystemDirectory, TSystemFile, TText, and TXTRU.
Definition at line 93 of file TNamed.cxx.
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inlinestatic |
Definition at line 204 of file MCMCCalculator.h.
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virtualinherited |
Delete this object.
Typically called as a command via the interpreter. Normally use "delete" operator when object has been allocated on the heap.
Reimplemented in RooLinkedList, TAxis, TBtree, TCanvas, TClonesArray, TCollection, TDirectory, TDirectoryFile, TExMap, TFile, TGFrame, TGItemContext, TGTextEdit, THashList, THashTable, TKey, TKeySQL, TKeyXML, TList, TListOfDataMembers, TListOfEnums, TListOfEnumsWithLock, TListOfFunctions, TListOfFunctionTemplates, TMap, TMVA::Results, TObjArray, TObjectTable, TOrdCollection, TProtoClass, TQCommand, TRefArray, TSystemDirectory, TSystemFile, TThread, TTree, TTreeViewer, TViewPubDataMembers, and TViewPubFunctions.
Definition at line 268 of file TObject.cxx.
Computes distance from point (px,py) to the object.
This member function must be implemented for each graphics primitive. This default function returns a big number (999999).
Reimplemented in TASImage, TAxis3D, TAxis, TBox, TBRIK, TColorWheel, TCrown, TCurlyArc, TCurlyLine, TDiamond, TEfficiency, TEllipse, TF1, TF2, TF3, TFileDrawMap, TGenerator, TGeoBBox, TGeoCompositeShape, TGeoCone, TGeoConeSeg, TGeoEltu, TGeoHalfSpace, TGeoHype, TGeoNode, TGeoOverlap, TGeoParaboloid, TGeoPcon, TGeoPgon, TGeoScaledShape, TGeoShape, TGeoShapeAssembly, TGeoSphere, TGeoTessellated, TGeoTorus, TGeoTrack, TGeoTube, TGeoTubeSeg, TGeoVGShape, TGeoVolume, TGeoXtru, TGL5DDataSet, TGLHistPainter, TGLParametricEquation, TGLScenePad, TGLTH3Composition, TGLViewer, TGraph2D, TGraph, TGraphEdge, TGraphNode, TGraphPolargram, TH1, THistPainter, THStack, TLine, TMarker3DBox, TMarker, TMultiGraph, TNode, TPad, TPaletteAxis, TParallelCoord, TParallelCoordRange, TParallelCoordVar, TParticle, TPave, TPCON, TPie, TPieSlice, TPoints3DABC, TPolyLine3D, TPolyLine, TPolyMarker3D, TPolyMarker, TPrimary, TScatter2D, TScatter, TSPHE, TSpider, TSpline, TStyle, TText, TTreePerfStats, TTUBE, TTUBS, TVirtualHistPainter, and TXTRU.
Definition at line 284 of file TObject.cxx.
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protectedvirtualinherited |
Interface to ErrorHandler (protected).
Reimplemented in TThread, and TTreeViewer.
Definition at line 1059 of file TObject.cxx.
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virtualinherited |
Default Draw method for all objects.
Reimplemented in RooAbsData, RooPlot, RooStats::HypoTestInverterPlot, RooStats::SamplingDistPlot, ROOT::Experimental::XRooFit::xRooNLLVar::xRooHypoPoint, ROOT::Experimental::XRooFit::xRooNLLVar::xRooHypoSpace, ROOT::Experimental::XRooFit::xRooNode, ROOT::RGeoPainter, TArrow, TASImage, TBox, TBrowser, TButton, TCanvas, TChain, TClass, TClassTree, TCollection, TColorWheel, TDiamond, TDirectory, TEfficiency, TEllipse, TEveGeoNode, TEveGeoTopNode, TF1, TF2, TF3, TFile, TFITSHDU, TFrame, TGenerator, TGeoBatemanSol, TGeometry, TGeoNode, TGeoOverlap, TGeoPainter, TGeoParallelWorld, TGeoPhysicalNode, TGeoPolygon, TGeoShape, TGeoTrack, TGeoVGShape, TGeoVolume, TGItemContext, TGListTree, TGPicture, TGraph2D, TGraph, TGraphPolar, TGraphPolargram, TGraphStruct, TGraphTime, TH1, THelix, THStack, TLegend, TMarker, TMatrixTBase< Element >, TMatrixTBase< Double_t >, TMatrixTBase< Float_t >, TMultiDimFit, TMultiGraph, TMultiLayerPerceptron, TNode, TNodeDiv, TPad, TParallelCoord, TParallelCoordRange, TParallelCoordVar, TPave, TPaveLabel, TPavesText, TPaveText, TPie, TPolyLine3D, TPolyLine, TPolyMarker3D, TPolyMarker, TRatioPlot, TSpider, TSpline, TStructViewer, TStructViewerGUI, TTree, TTreePerfStats, TVectorT< Element >, TVectorT< Double_t >, TVectorT< Float_t >, TVirtualPad, and TWbox.
Definition at line 293 of file TObject.cxx.
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virtualinherited |
Draw class inheritance tree of the class to which this object belongs.
If a class B inherits from a class A, description of B is drawn on the right side of description of A. Member functions overridden by B are shown in class A with a blue line crossing-out the corresponding member function. The following picture is the class inheritance tree of class TPaveLabel:
Reimplemented in TGFrame, TSystemDirectory, and TSystemFile.
Definition at line 308 of file TObject.cxx.
Draw a clone of this object in the current selected pad with: gROOT->SetSelectedPad(c1).
If pad was not selected - gPad will be used.
Reimplemented in TAxis, TCanvas, TGFrame, TSystemDirectory, and TSystemFile.
Definition at line 319 of file TObject.cxx.
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virtualinherited |
Dump contents of object on stdout.
Using the information in the object dictionary (class TClass) each data member is interpreted. If a data member is a pointer, the pointer value is printed
The following output is the Dump of a TArrow object:
Reimplemented in TClass, TCollection, TGFrame, TGPack, and TSystemFile.
Definition at line 367 of file TObject.cxx.
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virtualinherited |
Issue error message.
Use "location" to specify the method where the error occurred. Accepts standard printf formatting arguments.
Reimplemented in TFitResult.
Definition at line 1098 of file TObject.cxx.
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virtualinherited |
Execute method on this object with the given parameter string, e.g.
"3.14,1,\"text\"".
Reimplemented in ROOT::R::TRInterface, TCling, TContextMenu, TInterpreter, and TMethodCall.
Definition at line 378 of file TObject.cxx.
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virtualinherited |
Execute method on this object with parameters stored in the TObjArray.
The TObjArray should contain an argv vector like:
Reimplemented in ROOT::R::TRInterface, TCling, TContextMenu, TInterpreter, and TMethodCall.
Definition at line 398 of file TObject.cxx.
Execute action corresponding to an event at (px,py).
This method must be overridden if an object can react to graphics events.
Reimplemented in TASImage, TASPaletteEditor::LimitLine, TAxis3D, TAxis, TBox, TButton, TCanvas, TCrown, TCurlyArc, TCurlyLine, TDiamond, TEfficiency, TEllipse, TF1, TF2, TF3, TFrame, TGenerator, TGeoManager, TGeoNode, TGeoOverlap, TGeoShape, TGeoTrack, TGeoVolume, TGL5DDataSet, TGLEventHandler, TGLHistPainter, TGLParametricEquation, TGLScenePad, TGLTH3Composition, TGLViewer, TGraph2D, TGraph, TGraphEdge, TGraphNode, TGraphPolargram, TGroupButton, TH1, THistPainter, TLine, TLink, TMarker3DBox, TMarker, TNode, TPad, TPaletteAxis, TParallelCoord, TParallelCoordRange, TParallelCoordVar, TParticle, TPave, TPie, TPolyLine3D, TPolyLine, TPolyMarker3D, TPolyMarker, TPrimary, TScatter2D, TScatter, TSliderBox, TSpider, TSpline, TText, TTreePerfStats, TView3D, TView, TVirtualHistPainter, and TWbox.
Definition at line 415 of file TObject.cxx.
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virtualinherited |
Issue fatal error message.
Use "location" to specify the method where the fatal error occurred. Accepts standard printf formatting arguments.
Definition at line 1126 of file TObject.cxx.
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virtualinherited |
Encode TNamed into output buffer.
Reimplemented in TDirectoryFile, TFile, TKey, TKeySQL, TKeyXML, TSQLFile, and TXMLFile.
Definition at line 103 of file TNamed.cxx.
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virtualinherited |
Must be redefined in derived classes.
This function is typically used with TCollections, but can also be used to find an object by name inside this object.
Reimplemented in RooAbsCollection, RooLinkedList, TBtree, TCollection, TDirectory, TFolder, TGeometry, TGraph2D, TGraph, TH1, THashList, THashTable, THbookFile, TList, TListOfDataMembers, TListOfEnums, TListOfEnumsWithLock, TListOfFunctions, TListOfFunctionTemplates, TListOfTypes, TMap, TObjArray, TPad, TROOT, TViewPubDataMembers, and TViewPubFunctions.
Definition at line 425 of file TObject.cxx.
Must be redefined in derived classes.
This function is typically used with TCollections, but can also be used to find an object inside this object.
Reimplemented in RooAbsCollection, RooLinkedList, TBtree, TCollection, TDirectory, TFolder, TGeometry, TGraph2D, TGraph, TH1, THashList, THashTable, THbookFile, TList, TListOfDataMembers, TListOfEnums, TListOfEnumsWithLock, TListOfFunctions, TListOfFunctionTemplates, TListOfTypes, TMap, TObjArray, TPad, TROOT, TViewPubDataMembers, and TViewPubFunctions.
Definition at line 435 of file TObject.cxx.
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virtualinherited |
Get option used by the graphics system to draw this object.
Note that before calling object.GetDrawOption(), you must have called object.Draw(..) before in the current pad.
Reimplemented in TBrowser, TFitEditor, TGedFrame, TGFileBrowser, TRootBrowser, and TRootBrowserLite.
Definition at line 445 of file TObject.cxx.
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staticinherited |
Return destructor only flag.
Definition at line 1196 of file TObject.cxx.
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virtualinherited |
Returns mime type name of object.
Used by the TBrowser (via TGMimeTypes class). Override for class of which you would like to have different icons for objects of the same class.
Reimplemented in ROOT::Experimental::XRooFit::xRooNode, TASImage, TBranch, TBranchElement, TGeoVolume, TGMainFrame, TKey, TMethodBrowsable, TSystemFile, and TVirtualBranchBrowsable.
Definition at line 472 of file TObject.cxx.
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overridevirtual |
Main interface to get a ConfInterval.
Main interface to get a RooStats::ConfInterval.
Implements RooStats::IntervalCalculator.
Definition at line 138 of file MCMCCalculator.cxx.
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inlineoverridevirtualinherited |
Returns string containing info about the object at position (px,py).
This method is typically overridden by classes of which the objects can report peculiarities for different positions. Returned string will be re-used (lock in MT environment).
Reimplemented in TASImage, TAxis3D, TColorWheel, TF1, TF2, TFileDrawMap, TGeoNode, TGeoTrack, TGeoVolume, TGL5DDataSet, TGLHistPainter, TGLParametricEquation, TGLTH3Composition, TGraph, TH1, THistPainter, TNode, TPaletteAxis, TParallelCoordVar, and TVirtualHistPainter.
Definition at line 491 of file TObject.cxx.
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staticinherited |
Get status of object stat flag.
Definition at line 1181 of file TObject.cxx.
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inlinevirtualinherited |
Reimplemented in TArrow, TAxis3D, TFile, TGaxis, TGeoVolume, TH1, THelix, TLegendEntry, TMapFile, TNode, TPave, TPoints3DABC, TPolyLine3D, TPolyLine, TPolyMarker3D, TPolyMarker, TPSocket, TSelector, TSocket, and TUDPSocket.
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inlineoverridevirtualinherited |
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virtualinherited |
Return the unique object id.
Definition at line 480 of file TObject.cxx.
Execute action in response of a timer timing out.
This method must be overridden if an object has to react to timers.
Reimplemented in TGCommandPlugin, TGDNDManager, TGFileContainer, TGHtml, TGLEventHandler, TGPopupMenu, TGraphTime, TGScrollBar, TGShutter, TGTextEdit, TGTextEditor, TGTextEntry, TGTextView, TGToolTip, TGuiBldDragManager, TGWindow, and TTreeViewer.
Definition at line 516 of file TObject.cxx.
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inlineoverridevirtualinherited |
Return hash value for this object.
Note: If this routine is overloaded in a derived class, this derived class should also add
Otherwise, when RecursiveRemove is called (by ~TObject or example) for this type of object, the transversal of THashList and THashTable containers will will have to be done without call Hash (and hence be linear rather than logarithmic complexity). You will also see warnings like
Reimplemented from TObject.
|
inlineinherited |
Return true is the type of this object is known to have an inconsistent setup for Hash and RecursiveRemove (i.e.
missing call to RecursiveRemove in destructor).
Note: Since the consistency is only tested for during inserts, this routine will return true for object that have never been inserted whether or not they have a consistent setup. This has no negative side-effect as searching for the object with the right or wrong Hash will always yield a not-found answer (Since anyway no hash can be guaranteed unique, there is always a check)
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virtualinherited |
Issue info message.
Use "location" to specify the method where the warning occurred. Accepts standard printf formatting arguments.
Definition at line 1072 of file TObject.cxx.
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virtualinherited |
Returns kTRUE if object inherits from class "classname".
Reimplemented in TClass.
Definition at line 549 of file TObject.cxx.
Returns kTRUE if object inherits from TClass cl.
Reimplemented in TClass.
Definition at line 557 of file TObject.cxx.
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virtualinherited |
Dump contents of this object in a graphics canvas.
Same action as Dump but in a graphical form. In addition pointers to other objects can be followed.
The following picture is the Inspect of a histogram object:
Reimplemented in ROOT::Experimental::XRooFit::xRooNode, TGFrame, TInspectorObject, and TSystemFile.
Definition at line 570 of file TObject.cxx.
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inlineoverridevirtual |
Reimplemented from RooStats::IntervalCalculator.
Definition at line 204 of file MCMCCalculator.h.
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inlineinherited |
IsDestructed.
Default equal comparison (objects are equal if they have the same address in memory).
More complicated classes might want to override this function.
Reimplemented in TGObject, TObjString, TPair, and TQCommand.
Definition at line 589 of file TObject.cxx.
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virtualinherited |
Returns kTRUE in case object contains browsable objects (like containers or lists of other objects).
Reimplemented in ROOT::Experimental::XRooFit::xRooNode, ROOT::Internal::THnBaseBrowsable, TApplicationRemote, TAxis3D, TBaseClass, TBranch, TBranchClones, TBranchElement, TBranchObject, TBranchSTL, TBrowserObject, TCanvas, TClass, TCollection, TDatabasePDG, TDirectory, TFolder, TGeoManager, TGeometry, TGeoNode, TGeoNodeMatrix, TGeoOverlap, TGeoTrack, TGeoVolume, THbookFile, THbookKey, THnBase, TKey, TMapFile, TMultiDimFit, TNode, TPad, TPair, TParticleClassPDG, TPrincipal, TRemoteObject, TROOT, TRootIconList, TSPlot, TSystemDirectory, TTask, TTree, and TVirtualBranchBrowsable.
Definition at line 579 of file TObject.cxx.
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inlineoverridevirtualinherited |
Reimplemented from TObject.
Reimplemented in TStructNodeProperty.
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overridevirtualinherited |
List TNamed name and title.
Reimplemented from TObject.
Reimplemented in ROOT::Experimental::XRooFit::xRooBrowser, TNode, TROOT, TStreamerBase, TStreamerElement, TStreamerInfo, TStreamerSTL, TTask, TText, and TVirtualStreamerInfo.
Definition at line 112 of file TNamed.cxx.
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inherited |
Use this method to signal that a method (defined in a base class) may not be called in a derived class (in principle against good design since a child class should not provide less functionality than its parent, however, sometimes it is necessary).
Definition at line 1160 of file TObject.cxx.
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virtualinherited |
This method must be overridden to handle object notification (the base implementation is no-op).
Different objects in ROOT use the Notify method for different purposes, in coordination with other objects that call this method at the appropriate time.
For example, TLeaf uses it to load class information; TBranchRef to load contents of referenced branches TBranchRef; most notably, based on Notify, TChain implements a callback mechanism to inform interested parties when it switches to a new sub-tree.
Reimplemented in h1analysis, h1analysisTreeReader, TARInterruptHandler, TASInputHandler, TASInterruptHandler, TASLogHandler, TASSigPipeHandler, TBlinkTimer, TBranchElement, TBranchRef, TBreakLineCom, TBrowserTimer, TCollection, TDelCharCom, TDelTextCom, TFileHandler, TGContainerKeyboardTimer, TGContainerScrollTimer, TGInputHandler, TGLRedrawTimer, TGTextEditHist, TGuiBldDragManagerRepeatTimer, TIdleTimer, TInsCharCom, TInsTextCom, TInterruptHandler, TLeafObject, TMessageHandler, TNotifyLink< Type >, TNotifyLink< RNoCleanupNotifierHelper >, TNotifyLink< ROOT::Detail::TBranchProxy >, TNotifyLink< TTreeReader >, TPopupDelayTimer, TProcessEventTimer, TRefTable, TRepeatTimer, TSBRepeatTimer, TSelector, TSelectorDraw, TSelectorEntries, TSignalHandler, TSingleShotCleaner, TSocketHandler, TStdExceptionHandler, TSysEvtHandler, TTermInputHandler, TThreadTimer, TTimeOutTimer, TTimer, TTipDelayTimer, TTree, TTreeFormula, TTreeFormulaManager, TTreeReader, TViewTimer, and TViewUpdateTimer.
Definition at line 618 of file TObject.cxx.
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inherited |
Use this method to declare a method obsolete.
Specify as of which version the method is obsolete and as from which version it will be removed.
Definition at line 1169 of file TObject.cxx.
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inherited |
Operator delete for sized deallocation.
Definition at line 1234 of file TObject.cxx.
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inherited |
Operator delete.
Definition at line 1212 of file TObject.cxx.
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inherited |
Only called by placement new when throwing an exception.
Definition at line 1266 of file TObject.cxx.
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inherited |
Operator delete [] for sized deallocation.
Definition at line 1245 of file TObject.cxx.
|
inherited |
Operator delete [].
Definition at line 1223 of file TObject.cxx.
|
inherited |
Only called by placement new[] when throwing an exception.
Definition at line 1274 of file TObject.cxx.
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inlineinherited |
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inlineinherited |
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inlineinherited |
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virtualinherited |
This method must be overridden if a class wants to paint itself.
The difference between Paint() and Draw() is that when a object draws itself it is added to the display list of the pad in which it is drawn (and automatically redrawn whenever the pad is redrawn). While paint just draws the object without adding it to the pad display list.
Reimplemented in ROOT::Experimental::RTreeMapPainter, ROOT::RGeoPainter, TAnnotation, TArrow, TASImage, TASPaletteEditor::LimitLine, TASPaletteEditor::PaintPalette, TAxis3D, TBits, TBox, TButton, TCanvas, TClassTree, TCollection, TColorWheel, TCrown, TDiamond, TDirectory, TEfficiency, TEllipse, TEveArrow, TEveCaloViz, TEveDigitSet, TEveGeoShape, TEveGeoTopNode, TEvePlot3D, TEvePointSet, TEveProjectionAxes, TEveScene, TEveShape, TEveStraightLineSet, TEveText, TEveTriangleSet, TExec, TF1, TF2, TF3, TFile, TFileDrawMap, TFrame, TGaxis, TGenerator, TGeoBoolNode, TGeoIntersection, TGeoNode, TGeoOverlap, TGeoPainter, TGeoPhysicalNode, TGeoShape, TGeoSubtraction, TGeoTrack, TGeoUnion, TGeoVGShape, TGeoVolume, TGL5DDataSet, TGLHistPainter, TGLParametricEquation, TGLTH3Composition, TGraph2D, TGraph2DPainter, TGraph, TGraphEdge, TGraphNode, TGraphPolargram, TGraphTime, TH1, THistPainter, THStack, TLatex, TLegend, TLine, TMacro, TMarker3DBox, TMarker, TMathText, TMultiGraph, TNode, TNodeDiv, TPad, TPaletteAxis, TParallelCoord, TParallelCoordRange, TParallelCoordVar, TParticle, TPave, TPaveLabel, TPaveStats, TPavesText, TPaveText, TPie, TPolyLine3D, TPolyLine, TPolyMarker3D, TPolyMarker, TPrimary, TRatioPlot, TScatter2D, TScatter, TShape, TSpectrum2Painter, TSpider, TSpline, TSQLFile, TStyle, TText, TTreePerfStats, TVirtualGeoPainter, TVirtualGeoTrack, TVirtualHistPainter, TVirtualPad, TWbox, and TXMLFile.
Definition at line 631 of file TObject.cxx.
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virtualinherited |
Pop on object drawn in a pad to the top of the display list.
I.e. it will be drawn last and on top of all other primitives.
Reimplemented in TFrame, TPad, and TVirtualPad.
Definition at line 640 of file TObject.cxx.
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overridevirtualinherited |
Print TNamed name and title.
Reimplemented from TObject.
Reimplemented in ROOT::Experimental::XRooFit::xRooNLLVar::xRooHypoPoint, ROOT::Experimental::XRooFit::xRooNLLVar::xRooHypoSpace, ROOT::Experimental::XRooFit::xRooNode, TParallelCoordRange, TParallelCoordVar, TParticleClassPDG, TParticlePDG, TPrincipal, TScatter2D, TScatter, TSpectrum2, TSpectrum3, TSpectrum, TSQLColumnInfo, TSQLFile, TSQLTableInfo, TText, TTree, TTreeIndex, TXMLFile, and TXTRU.
Definition at line 127 of file TNamed.cxx.
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virtualinherited |
Read contents of object with specified name from the current directory.
First the key with the given name is searched in the current directory, next the key buffer is deserialized into the object. The object must have been created before via the default constructor. See TObject::Write().
Reimplemented in TBuffer, TKey, TKeySQL, and TKeyXML.
Definition at line 673 of file TObject.cxx.
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virtualinherited |
Recursively remove this object from a list.
Typically implemented by classes that can contain multiple references to a same object.
Reimplemented in RooAbsCollection, RooAbsData, RooLinkedList, RooMCStudy, ROOT::Internal::TCheckHashRecursiveRemoveConsistency, ROOT::RBrowserDataCleanup, RooWorkspace, TBrowser, TChain, TCling, TCollection, TDialogCanvas, TDirectory, TEfficiency, TFileMerger, TFitEditor, TFolder, TFriendElement, TGedEditor, TGeometry, TGFileBrowser, TGraph2D, TGraph, TH1, TH1Editor, TH2Editor, THashList, THistPainter, THStack, TInspectCanvas, TLegend, TList, TListOfDataMembers, TListOfEnums, TListOfEnumsWithLock, TListOfFunctions, TListOfFunctionTemplates, TMultiGraph, TNode, TObjArray, TObjectRefSpy, TObjectSpy, TPad, TProcessID, TROOT, TRootBrowser, TRootBrowserHistory, TRootBrowserLite, TRootContextMenu, TTree, TTreePlayer, TViewPubDataMembers, TViewPubFunctions, and TVirtualPad.
Definition at line 684 of file TObject.cxx.
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virtualinherited |
Save this object in the file specified by filename.
otherwise the object is written to filename as a CINT/C++ script. The C++ code to rebuild this object is generated via SavePrimitive(). The "option" parameter is passed to SavePrimitive. By default it is an empty string. It can be used to specify the Draw option in the code generated by SavePrimitive.
The function is available via the object context menu.
Reimplemented in ROOT::Experimental::XRooFit::xRooNode, TClassTree, TFolder, TGeoVolume, TGObject, TGraph, TH1, TPad, TPaveClass, TSpline3, TSpline5, TSpline, TTreePerfStats, and TVirtualPad.
Definition at line 708 of file TObject.cxx.
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virtualinherited |
Save a primitive as a C++ statement(s) on output stream "out".
Reimplemented in TAnnotation, TArc, TArrow, TASImage, TAxis3D, TBox, TButton, TCanvas, TChain, TCrown, TCurlyArc, TCurlyLine, TCutG, TDiamond, TEfficiency, TEllipse, TExec, TF12, TF1, TF2, TF3, TFrame, TGaxis, TGButton, TGButtonGroup, TGCanvas, TGCheckButton, TGColorSelect, TGColumnLayout, TGComboBox, TGCompositeFrame, TGContainer, TGDockableFrame, TGDoubleHSlider, TGDoubleVSlider, TGedMarkerSelect, TGedPatternSelect, TGeoArb8, TGeoBBox, TGeoBoolNode, TGeoCombiTrans, TGeoCompositeShape, TGeoCone, TGeoConeSeg, TGeoCtub, TGeoDecayChannel, TGeoElementRN, TGeoEltu, TGeoGtra, TGeoHalfSpace, TGeoHMatrix, TGeoHype, TGeoIdentity, TGeoIntersection, TGeoMaterial, TGeoMedium, TGeoMixture, TGeoPara, TGeoParaboloid, TGeoPatternCylPhi, TGeoPatternCylR, TGeoPatternParaX, TGeoPatternParaY, TGeoPatternParaZ, TGeoPatternSphPhi, TGeoPatternSphR, TGeoPatternSphTheta, TGeoPatternTrapZ, TGeoPatternX, TGeoPatternY, TGeoPatternZ, TGeoPcon, TGeoPgon, TGeoRotation, TGeoScaledShape, TGeoShapeAssembly, TGeoSphere, TGeoSubtraction, TGeoTessellated, TGeoTorus, TGeoTranslation, TGeoTrap, TGeoTrd1, TGeoTrd2, TGeoTube, TGeoTubeSeg, TGeoUnion, TGeoVolume, TGeoXtru, TGFileContainer, TGFont, TGFrame, TGFSComboBox, TGGC, TGGroupFrame, TGHButtonGroup, TGHorizontal3DLine, TGHorizontalFrame, TGHorizontalLayout, TGHProgressBar, TGHScrollBar, TGHSlider, TGHSplitter, TGHtml, TGIcon, TGLabel, TGLayoutHints, TGLineStyleComboBox, TGLineWidthComboBox, TGListBox, TGListDetailsLayout, TGListLayout, TGListTree, TGListView, TGLVContainer, TGMainFrame, TGMatrixLayout, TGMdiFrame, TGMdiMainFrame, TGMdiMenuBar, TGMenuBar, TGMenuTitle, TGNumberEntry, TGNumberEntryField, TGPictureButton, TGPopupMenu, TGProgressBar, TGRadioButton, TGraph2D, TGraph2DAsymmErrors, TGraph2DErrors, TGraph, TGraphAsymmErrors, TGraphBentErrors, TGraphEdge, TGraphErrors, TGraphMultiErrors, TGraphNode, TGraphPolar, TGraphPolargram, TGraphStruct, TGroupButton, TGRowLayout, TGShapedFrame, TGShutter, TGShutterItem, TGSplitFrame, TGStatusBar, TGTab, TGTabLayout, TGTableLayout, TGTableLayoutHints, TGTextButton, TGTextEdit, TGTextEntry, TGTextLBEntry, TGTextView, TGTileLayout, TGToolBar, TGTransientFrame, TGTripleHSlider, TGTripleVSlider, TGVButtonGroup, TGVertical3DLine, TGVerticalFrame, TGVerticalLayout, TGVFileSplitter, TGVProgressBar, TGVScrollBar, TGVSlider, TGVSplitter, TGXYLayout, TGXYLayoutHints, TH1, TH2Poly, THelix, THStack, TLatex, TLegend, TLine, TMacro, TMarker3DBox, TMarker, TMathText, TMultiGraph, TPad, TPaletteAxis, TParallelCoord, TParallelCoordVar, TPave, TPaveClass, TPaveLabel, TPaveStats, TPavesText, TPaveText, TPie, TPieSlice, TPolyLine3D, TPolyLine, TPolyMarker3D, TPolyMarker, TProfile2D, TProfile3D, TProfile, TRootContainer, TRootEmbeddedCanvas, TScatter2D, TScatter, TSlider, TSliderBox, TSpline3, TSpline5, TStyle, TText, TTreePerfStats, and TWbox.
Definition at line 858 of file TObject.cxx.
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staticprotectedinherited |
Save object constructor in the output stream "out".
Can be used as first statement when implementing SavePrimitive() method for the object
Definition at line 777 of file TObject.cxx.
|
staticprotectedinherited |
Save invocation of primitive Draw() method Skipped if option contains "nodraw" string.
Definition at line 845 of file TObject.cxx.
|
protectedinherited |
Save object name and title into the output stream "out".
Definition at line 135 of file TNamed.cxx.
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staticprotectedinherited |
Save array in the output stream "out" as vector.
Create unique variable name based on prefix value Returns name of vector which can be used in constructor or in other places of C++ code If flag === kTRUE, just add empty line If flag === 111, check if array is empty and return nullptr or <vectorname>.data()
Definition at line 796 of file TObject.cxx.
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inlinevirtual |
set which variables to put on each axis
Definition at line 103 of file MCMCCalculator.h.
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inlineprotected |
Definition at line 195 of file MCMCCalculator.h.
Set or unset the user status bits as specified in f.
Definition at line 888 of file TObject.cxx.
|
inlinevirtual |
specify the parameters to store in the Markov chain By default all the parameters are stored
Definition at line 68 of file MCMCCalculator.h.
|
inlinevirtual |
set the conditional observables which will be used when creating the NLL so the pdf's will not be normalized on the conditional observables when computing the NLL
Definition at line 75 of file MCMCCalculator.h.
|
inlineoverridevirtual |
set the confidence level for the interval (eg. 0.95 for a 95% Confidence Interval)
Implements RooStats::IntervalCalculator.
Definition at line 85 of file MCMCCalculator.h.
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inlineoverridevirtual |
Set the DataSet if not already there.
Implements RooStats::IntervalCalculator.
Definition at line 55 of file MCMCCalculator.h.
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virtualinherited |
Set drawing option for object.
This option only affects the drawing style and is stored in the option field of the TObjOptLink supporting a TPad's primitive list (TList). Note that it does not make sense to call object.SetDrawOption(option) before having called object.Draw().
Reimplemented in RooPlot, TAxis, TBrowser, TGedFrame, TGFrame, TPad, TPaveStats, TRootBrowserLite, TSystemDirectory, and TSystemFile.
Definition at line 871 of file TObject.cxx.
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staticinherited |
Set destructor only flag.
Definition at line 1204 of file TObject.cxx.
|
inlinevirtual |
set the global observables which will be used when creating the NLL so the constraint pdf's will be normalized correctly on the global observables when computing the NLL
Definition at line 79 of file MCMCCalculator.h.
|
inlinevirtual |
set what type of interval to have the MCMCInterval represent
Definition at line 112 of file MCMCCalculator.h.
|
inlinevirtual |
Set the left side tail fraction.
This will automatically configure the MCMCInterval to find a tail-fraction interval. Note: that `a' must be in the range 0 <= a <= 1 or the user will be notified of the error */ virtual void SetLeftSideTailFraction(double a);
/** Set the desired level of confidence-level accuracy for Keys interval determination. When determining the cutoff PDF height that gives the desired confidence level (C_d), the algorithm will consider acceptable any found confidence level c such that Abs(c - C_d) < epsilon.
Any value of this "epsilon" > 0 is considered acceptable, though it is advisable to not use a value too small, because the integration of the Keys PDF sometimes does not have extremely high accuracy.
Definition at line 131 of file MCMCCalculator.h.
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inlinevirtual |
When the shortest interval using Keys PDF could not be found to have the desired confidence level +/- the accuracy (see SetKeysConfidenceAccuracy()), the interval determination algorithm will have to terminate with an unsatisfactory confidence level when the bottom and top of the cutoff search range are very close to being equal.
This scenario comes into play when there seems to be an error in the accuracy of the Keys PDF integration, so the search range continues to shrink without converging to a cutoff value that will give an acceptable confidence level. To choose how small to allow the search range to be before terminating, set the fraction delta such that the search will terminate when topCutoff (a) and bottomCutoff (b) satisfy this condition:
std::abs(a - b) < std::abs(delta * (a + b)/2)
Definition at line 155 of file MCMCCalculator.h.
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overridevirtual |
Set the Model.
Implements RooStats::IntervalCalculator.
Definition at line 80 of file MCMCCalculator.cxx.
|
virtualinherited |
Set the name of the TNamed.
WARNING: if the object is a member of a THashTable or THashList container the container must be Rehash()'ed after SetName(). For example the list of objects in the current directory is a THashList.
Reimplemented in RooAbsArg, RooAbsData, RooDataHist, RooDataSet, RooFitResult, RooPlot, ROOT::Experimental::XRooFit::xRooNode, TChain, TColor, TDirectory, TEfficiency, TEventList, TEveScene, TFormula, TGraph2D, TGraph, TH1, TNode, TRotMatrix, TShape, TSystemDirectory, TSystemFile, and TTree.
Definition at line 149 of file TNamed.cxx.
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virtualinherited |
Set all the TNamed parameters (name and title).
WARNING: if the name is changed and the object is a member of a THashTable or THashList container the container must be Rehash()'ed after SetName(). For example the list of objects in the current directory is a THashList.
Reimplemented in RooAbsArg, RooAbsData, RooDataHist, RooDataSet, RooFitResult, RooPlot, TContextMenu, TGraph2D, TGraph, TH1, and TNode.
Definition at line 163 of file TNamed.cxx.
|
inlinevirtual |
specify the nuisance parameters (eg. the rest of the parameters)
Definition at line 71 of file MCMCCalculator.h.
|
inlinevirtual |
set the number of bins to create for each axis when constructing the interval
Definition at line 101 of file MCMCCalculator.h.
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set the number of steps in the chain to discard as burn-in, starting from the first
Definition at line 97 of file MCMCCalculator.h.
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set the number of iterations to run the metropolis algorithm
Definition at line 92 of file MCMCCalculator.h.
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Turn on/off tracking of objects in the TObjectTable.
Definition at line 1188 of file TObject.cxx.
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specify the parameters of interest in the interval
Definition at line 64 of file MCMCCalculator.h.
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Set the Pdf if not already there.
Definition at line 58 of file MCMCCalculator.h.
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Set the Prior Pdf if not already there.
Definition at line 61 of file MCMCCalculator.h.
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set the proposal function for suggesting new points for the MCMC
Definition at line 88 of file MCMCCalculator.h.
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set the size of the test (rate of Type I error) ( Eg. 0.05 for a 95% Confidence Interval)
Implements RooStats::IntervalCalculator.
Definition at line 82 of file MCMCCalculator.h.
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Set the title of the TNamed.
Reimplemented in Axis2, RooPlot, ROOT::Experimental::XRooFit::xRooNode, ROOT::TSchemaRule::TSources, TASImage, TEfficiency, TF1, TGraph2D, TGraph, TH1, THnBase, TParallelCoordVar, TSystemDirectory, and TSystemFile.
Definition at line 173 of file TNamed.cxx.
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Set the unique object id.
Definition at line 899 of file TObject.cxx.
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Constructor for automatic configuration with basic settings.
Uses a UniformProposal, 10,000 iterations, 40 burn in steps, 50 bins for each RooRealVar, determines interval by histogram. Finds a 95% confidence interval.
Definition at line 105 of file MCMCCalculator.cxx.
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set whether to use kernel estimation to determine the interval
Definition at line 106 of file MCMCCalculator.h.
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set whether to use sparse histogram (if using histogram at all)
Definition at line 108 of file MCMCCalculator.h.
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Get the size of the test (eg. rate of Type I error).
Implements RooStats::IntervalCalculator.
Definition at line 48 of file MCMCCalculator.h.
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Return size of the TNamed part of the TObject.
Reimplemented in TDirectory, TDirectoryFile, TFile, TKey, TSQLFile, and TXMLFile.
Definition at line 182 of file TNamed.cxx.
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Reimplemented from RooStats::IntervalCalculator.
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inline |
Definition at line 204 of file MCMCCalculator.h.
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Issue system error message.
Use "location" to specify the method where the system error occurred. Accepts standard printf formatting arguments.
Definition at line 1112 of file TObject.cxx.
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virtualinherited |
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virtualinherited |
Issue warning message.
Use "location" to specify the method where the warning occurred. Accepts standard printf formatting arguments.
Definition at line 1084 of file TObject.cxx.
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Write this object to the current directory.
For more see the const version of this method.
Reimplemented in ROOT::TBufferMergerFile, TBuffer, TCollection, TDirectory, TDirectoryFile, TFile, TMap, TParallelMergingFile, TSQLFile, TTree, and TXMLFile.
Definition at line 989 of file TObject.cxx.
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virtualinherited |
Write this object to the current directory.
The data structure corresponding to this object is serialized. The corresponding buffer is written to the current directory with an associated key with name "name".
Writing an object to a file involves the following steps:
Bufsize can be given to force a given buffer size to write this object. By default, the buffersize will be taken from the average buffer size of all objects written to the current file so far.
If a name is specified, it will be the name of the key. If name is not given, the name of the key will be the name as returned by GetName().
The option can be a combination of: kSingleKey, kOverwrite or kWriteDelete Using the kOverwrite option a previous key with the same name is overwritten. The previous key is deleted before writing the new object. Using the kWriteDelete option a previous key with the same name is deleted only after the new object has been written. This option is safer than kOverwrite but it is slower. NOTE: Neither kOverwrite nor kWriteDelete reduces the size of a TFile– the space is simply freed up to be overwritten; in the case of a TTree, it is more complicated. If one opens a TTree, appends some entries, then writes it out, the behaviour is effectively the same. If, however, one creates a new TTree and writes it out in this way, only the metadata is replaced, effectively making the old data invisible without deleting it. TTree::Delete() can be used to mark all disk space occupied by a TTree as free before overwriting its metadata this way. The kSingleKey option is only used by TCollection::Write() to write a container with a single key instead of each object in the container with its own key.
An object is read from the file into memory via TKey::Read() or via TObject::Read().
The function returns the total number of bytes written to the file. It returns 0 if the object cannot be written.
Reimplemented in TBuffer, TCollection, TDirectory, TDirectoryFile, TFile, TMap, TParallelMergingFile, TSQLFile, TTree, and TXMLFile.
Definition at line 964 of file TObject.cxx.
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which variables to put on each axis
Definition at line 180 of file MCMCCalculator.h.
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parameters to store in the chain (if not specified they are all of them )
Definition at line 169 of file MCMCCalculator.h.
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conditional observables
Definition at line 170 of file MCMCCalculator.h.
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pointer to the data (owned by the workspace)
Definition at line 175 of file MCMCCalculator.h.
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acceptable error for Keys cutoffs being equal topCutoff (a) considered == bottomCutoff (b) iff (std::abs(a - b) < std::abs(fDelta * (a + b)/2)); Theoretically, the Abs is not needed here, but floating-point arithmetic does not always work perfectly, and the Abs doesn't hurt
Definition at line 186 of file MCMCCalculator.h.
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acceptable error for Keys interval determination
Definition at line 184 of file MCMCCalculator.h.
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staticprivateinherited |
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global observables
Definition at line 171 of file MCMCCalculator.h.
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Definition at line 192 of file MCMCCalculator.h.
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left side tail-fraction for interval
Definition at line 183 of file MCMCCalculator.h.
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nuisance parameters for interval (not really used)
Definition at line 168 of file MCMCCalculator.h.
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set the number of bins to create for each axis when constructing the interval
Definition at line 178 of file MCMCCalculator.h.
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number of iterations to discard as burn-in, starting from the first
Definition at line 177 of file MCMCCalculator.h.
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number of iterations to run metropolis algorithm
Definition at line 176 of file MCMCCalculator.h.
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protected |
pointer to common PDF (owned by the workspace)
Definition at line 173 of file MCMCCalculator.h.
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parameters of interest for interval
Definition at line 167 of file MCMCCalculator.h.
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protected |
pointer to prior PDF (owned by the workspace)
Definition at line 174 of file MCMCCalculator.h.
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mutableprotected |
Proposal function for MCMC integration.
Definition at line 172 of file MCMCCalculator.h.
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protected |
size of the test (eg. specified rate of Type I error)
Definition at line 166 of file MCMCCalculator.h.
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privateinherited |
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protected |
whether to use kernel estimation to determine interval
Definition at line 181 of file MCMCCalculator.h.
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whether to use sparse histogram (if using hist at all)
Definition at line 182 of file MCMCCalculator.h.