Single Value Decomposition class.
For an (m x n) matrix A with m >= n, the singular value decomposition is an (m x m) orthogonal matrix fU, an (m x n) diagonal matrix fS, and an (n x n) orthogonal matrix fV so that A = U*S*V'.
If the row/column index of A starts at (rowLwb,colLwb) then the decomposed matrices/vectors start at :
The diagonal matrix fS is stored in the singular values vector fSig . The singular values, fSig[k] = S[k][k], are ordered so that fSig[0] >= fSig[1] >= ... >= fSig[n-1].
The singular value decomposition always exists, so the decomposition will (as long as m >=n) never fail. If m < n, the user should add sufficient zero rows to A , so that m == n
Here fTol is used to set the threshold on the minimum allowed value of the singular values: min_singular = fTol*max(fSig[i])
Definition at line 23 of file TDecompSVD.h.
Public Types | |
| enum | { kWorkMax = 100 } |
Public Types inherited from TObject | |
| enum | { kIsOnHeap = 0x01000000 , kNotDeleted = 0x02000000 , kZombie = 0x04000000 , kInconsistent = 0x08000000 , kBitMask = 0x00ffffff } |
| enum | { kSingleKey = (1ULL << ( 0 )) , kOverwrite = (1ULL << ( 1 )) , kWriteDelete = (1ULL << ( 2 )) } |
| enum | EDeprecatedStatusBits { kObjInCanvas = (1ULL << ( 3 )) } |
| enum | EStatusBits { kCanDelete = (1ULL << ( 0 )) , kMustCleanup = (1ULL << ( 3 )) , kIsReferenced = (1ULL << ( 4 )) , kHasUUID = (1ULL << ( 5 )) , kCannotPick = (1ULL << ( 6 )) , kNoContextMenu = (1ULL << ( 8 )) , kInvalidObject = (1ULL << ( 13 )) } |
Public Member Functions | |
| TDecompSVD () | |
| TDecompSVD (const TDecompSVD &another) | |
| Copy constructor. | |
| TDecompSVD (const TMatrixD &m, Double_t tol=0.0) | |
| Constructor for general matrix A . | |
| TDecompSVD (Int_t nrows, Int_t ncols) | |
| Constructor for (nrows x ncols) matrix. | |
| TDecompSVD (Int_t row_lwb, Int_t row_upb, Int_t col_lwb, Int_t col_upb) | |
| Constructor for ([row_lwb..row_upb] x [col_lwb..col_upb]) matrix. | |
| ~TDecompSVD () override | |
| Double_t | Condition () override |
| Matrix condition number. | |
| Bool_t | Decompose () override |
| SVD decomposition of matrix If the decomposition succeeds, bit kDecomposed is set , otherwise kSingular. | |
| void | Det (Double_t &d1, Double_t &d2) override |
| Matrix determinant det = d1*TMath::Power(2.,d2) | |
| const TMatrixD | GetMatrix () |
| Reconstruct the original matrix using the decomposition parts. | |
| Int_t | GetNcols () const override |
| Int_t | GetNrows () const override |
| const TVectorD & | GetSig () |
| const TMatrixD & | GetU () |
| const TMatrixD & | GetV () |
| TMatrixD | Invert () |
| TMatrixD | Invert (Bool_t &status) |
| For a matrix A(m,n), its inverse A_inv is defined as A * A_inv = A_inv * A = unit (n x m) Ainv is returned . | |
| Bool_t | Invert (TMatrixD &inv) |
| For a matrix A(m,n), its inverse A_inv is defined as A * A_inv = A_inv * A = unit The user should always supply a matrix of size (m x m) ! If m > n , only the (n x m) part of the returned (pseudo inverse) matrix should be used . | |
| TClass * | IsA () const override |
| TDecompSVD & | operator= (const TDecompSVD &source) |
| Assignment operator. | |
| void | Print (Option_t *opt="") const override |
| Print class members. | |
| virtual void | SetMatrix (const TMatrixD &a) |
| Set matrix to be decomposed. | |
| TVectorD | Solve (const TVectorD &b, Bool_t &ok) override |
| Bool_t | Solve (TMatrixDColumn &b) override |
| Solve Ax=b assuming the SVD form of A is stored . | |
| Bool_t | Solve (TVectorD &b) override |
| Solve Ax=b assuming the SVD form of A is stored . | |
| void | Streamer (TBuffer &) override |
| Stream an object of class TObject. | |
| void | StreamerNVirtual (TBuffer &ClassDef_StreamerNVirtual_b) |
| TVectorD | TransSolve (const TVectorD &b, Bool_t &ok) override |
| Bool_t | TransSolve (TMatrixDColumn &b) override |
| Solve A^T x=b assuming the SVD form of A is stored . Solution returned in b. | |
| Bool_t | TransSolve (TVectorD &b) override |
| Solve A^T x=b assuming the SVD form of A is stored . Solution returned in b. | |
Public Member Functions inherited from TDecompBase | |
| TDecompBase () | |
| Default constructor. | |
| TDecompBase (const TDecompBase &another) | |
| Copy constructor. | |
| ~TDecompBase () override | |
| Int_t | GetColLwb () const |
| Double_t | GetCondition () const |
| Double_t | GetDet1 () const |
| Double_t | GetDet2 () const |
| Int_t | GetRowLwb () const |
| Double_t | GetTol () const |
| virtual Bool_t | MultiSolve (TMatrixD &B) |
| Solve set of equations with RHS in columns of B. | |
| TDecompBase & | operator= (const TDecompBase &source) |
| Assignment operator. | |
| Double_t | SetTol (Double_t tol) |
| void | StreamerNVirtual (TBuffer &ClassDef_StreamerNVirtual_b) |
Public Member Functions inherited from TObject | |
| TObject () | |
| TObject constructor. | |
| TObject (const TObject &object) noexcept | |
| TObject copy ctor. | |
| virtual | ~TObject () |
| TObject destructor. | |
| void | AbstractMethod (const char *method) const |
| Call this function within a function that you don't want to define as purely virtual, in order not to force all users deriving from that class to implement that maybe (on their side) unused function; but at the same time, emit a run-time warning if they try to call it, telling that it is not implemented in the derived class: action must thus be taken on the user side to override it. | |
| virtual void | AppendPad (Option_t *option="") |
| Append graphics object to current pad. | |
| virtual void | Browse (TBrowser *b) |
| Browse object. May be overridden for another default action. | |
| ULong_t | CheckedHash () |
| Check and record whether this class has a consistent Hash/RecursiveRemove setup (*) and then return the regular Hash value for this object. | |
| virtual const char * | ClassName () const |
| Returns name of class to which the object belongs. | |
| virtual void | Clear (Option_t *="") |
| virtual TObject * | Clone (const char *newname="") const |
| Make a clone of an object using the Streamer facility. | |
| virtual Int_t | Compare (const TObject *obj) const |
| Compare abstract method. | |
| virtual void | Copy (TObject &object) const |
| Copy this to obj. | |
| virtual void | Delete (Option_t *option="") |
| Delete this object. | |
| virtual Int_t | DistancetoPrimitive (Int_t px, Int_t py) |
| Computes distance from point (px,py) to the object. | |
| virtual void | Draw (Option_t *option="") |
| Default Draw method for all objects. | |
| virtual void | DrawClass () const |
| Draw class inheritance tree of the class to which this object belongs. | |
| virtual TObject * | DrawClone (Option_t *option="") const |
Draw a clone of this object in the current selected pad with: gROOT->SetSelectedPad(c1). | |
| virtual void | Dump () const |
| Dump contents of object on stdout. | |
| virtual void | Error (const char *method, const char *msgfmt,...) const |
| Issue error message. | |
| virtual void | Execute (const char *method, const char *params, Int_t *error=nullptr) |
| Execute method on this object with the given parameter string, e.g. | |
| virtual void | Execute (TMethod *method, TObjArray *params, Int_t *error=nullptr) |
| Execute method on this object with parameters stored in the TObjArray. | |
| virtual void | ExecuteEvent (Int_t event, Int_t px, Int_t py) |
| Execute action corresponding to an event at (px,py). | |
| virtual void | Fatal (const char *method, const char *msgfmt,...) const |
| Issue fatal error message. | |
| virtual TObject * | FindObject (const char *name) const |
| Must be redefined in derived classes. | |
| virtual TObject * | FindObject (const TObject *obj) const |
| Must be redefined in derived classes. | |
| virtual Option_t * | GetDrawOption () const |
| Get option used by the graphics system to draw this object. | |
| virtual const char * | GetIconName () const |
| Returns mime type name of object. | |
| virtual const char * | GetName () const |
| Returns name of object. | |
| virtual char * | GetObjectInfo (Int_t px, Int_t py) const |
| Returns string containing info about the object at position (px,py). | |
| virtual Option_t * | GetOption () const |
| virtual const char * | GetTitle () const |
| Returns title of object. | |
| virtual UInt_t | GetUniqueID () const |
| Return the unique object id. | |
| virtual Bool_t | HandleTimer (TTimer *timer) |
| Execute action in response of a timer timing out. | |
| virtual ULong_t | Hash () const |
| Return hash value for this object. | |
| Bool_t | HasInconsistentHash () const |
| Return true is the type of this object is known to have an inconsistent setup for Hash and RecursiveRemove (i.e. | |
| virtual void | Info (const char *method, const char *msgfmt,...) const |
| Issue info message. | |
| virtual Bool_t | InheritsFrom (const char *classname) const |
| Returns kTRUE if object inherits from class "classname". | |
| virtual Bool_t | InheritsFrom (const TClass *cl) const |
| Returns kTRUE if object inherits from TClass cl. | |
| virtual void | Inspect () const |
| Dump contents of this object in a graphics canvas. | |
| void | InvertBit (UInt_t f) |
| Bool_t | IsDestructed () const |
| IsDestructed. | |
| virtual Bool_t | IsEqual (const TObject *obj) const |
| Default equal comparison (objects are equal if they have the same address in memory). | |
| virtual Bool_t | IsFolder () const |
| Returns kTRUE in case object contains browsable objects (like containers or lists of other objects). | |
| R__ALWAYS_INLINE Bool_t | IsOnHeap () const |
| virtual Bool_t | IsSortable () const |
| R__ALWAYS_INLINE Bool_t | IsZombie () const |
| virtual void | ls (Option_t *option="") const |
| The ls function lists the contents of a class on stdout. | |
| void | MayNotUse (const char *method) const |
| Use this method to signal that a method (defined in a base class) may not be called in a derived class (in principle against good design since a child class should not provide less functionality than its parent, however, sometimes it is necessary). | |
| virtual Bool_t | Notify () |
| This method must be overridden to handle object notification (the base implementation is no-op). | |
| void | Obsolete (const char *method, const char *asOfVers, const char *removedFromVers) const |
| Use this method to declare a method obsolete. | |
| void | operator delete (void *, size_t) |
| Operator delete for sized deallocation. | |
| void | operator delete (void *ptr) |
| Operator delete. | |
| void | operator delete (void *ptr, void *vp) |
| Only called by placement new when throwing an exception. | |
| void | operator delete[] (void *, size_t) |
| Operator delete [] for sized deallocation. | |
| void | operator delete[] (void *ptr) |
| Operator delete []. | |
| void | operator delete[] (void *ptr, void *vp) |
| Only called by placement new[] when throwing an exception. | |
| void * | operator new (size_t sz) |
| void * | operator new (size_t sz, void *vp) |
| void * | operator new[] (size_t sz) |
| void * | operator new[] (size_t sz, void *vp) |
| TObject & | operator= (const TObject &rhs) noexcept |
| TObject assignment operator. | |
| virtual void | Paint (Option_t *option="") |
| This method must be overridden if a class wants to paint itself. | |
| virtual void | Pop () |
| Pop on object drawn in a pad to the top of the display list. | |
| virtual Int_t | Read (const char *name) |
| Read contents of object with specified name from the current directory. | |
| virtual void | RecursiveRemove (TObject *obj) |
| Recursively remove this object from a list. | |
| void | ResetBit (UInt_t f) |
| virtual void | SaveAs (const char *filename="", Option_t *option="") const |
| Save this object in the file specified by filename. | |
| virtual void | SavePrimitive (std::ostream &out, Option_t *option="") |
| Save a primitive as a C++ statement(s) on output stream "out". | |
| void | SetBit (UInt_t f) |
| void | SetBit (UInt_t f, Bool_t set) |
| Set or unset the user status bits as specified in f. | |
| virtual void | SetDrawOption (Option_t *option="") |
| Set drawing option for object. | |
| virtual void | SetUniqueID (UInt_t uid) |
| Set the unique object id. | |
| void | StreamerNVirtual (TBuffer &ClassDef_StreamerNVirtual_b) |
| virtual void | SysError (const char *method, const char *msgfmt,...) const |
| Issue system error message. | |
| R__ALWAYS_INLINE Bool_t | TestBit (UInt_t f) const |
| Int_t | TestBits (UInt_t f) const |
| virtual void | UseCurrentStyle () |
| Set current style settings in this object This function is called when either TCanvas::UseCurrentStyle or TROOT::ForceStyle have been invoked. | |
| virtual void | Warning (const char *method, const char *msgfmt,...) const |
| Issue warning message. | |
| virtual Int_t | Write (const char *name=nullptr, Int_t option=0, Int_t bufsize=0) |
| Write this object to the current directory. | |
| virtual Int_t | Write (const char *name=nullptr, Int_t option=0, Int_t bufsize=0) const |
| Write this object to the current directory. | |
Static Public Member Functions | |
| static TClass * | Class () |
| static const char * | Class_Name () |
| static constexpr Version_t | Class_Version () |
| static const char * | DeclFileName () |
Static Public Member Functions inherited from TDecompBase | |
| static TClass * | Class () |
| static const char * | Class_Name () |
| static constexpr Version_t | Class_Version () |
| static const char * | DeclFileName () |
Static Public Member Functions inherited from TObject | |
| static TClass * | Class () |
| static const char * | Class_Name () |
| static constexpr Version_t | Class_Version () |
| static const char * | DeclFileName () |
| static Longptr_t | GetDtorOnly () |
| Return destructor only flag. | |
| static Bool_t | GetObjectStat () |
| Get status of object stat flag. | |
| static void | SetDtorOnly (void *obj) |
| Set destructor only flag. | |
| static void | SetObjectStat (Bool_t stat) |
| Turn on/off tracking of objects in the TObjectTable. | |
Protected Member Functions | |
| const TMatrixDBase & | GetDecompMatrix () const override |
Protected Member Functions inherited from TDecompBase | |
| Int_t | Hager (Double_t &est, Int_t iter=5) |
| void | ResetStatus () |
Protected Member Functions inherited from TObject | |
| virtual void | DoError (int level, const char *location, const char *fmt, va_list va) const |
| Interface to ErrorHandler (protected). | |
| void | MakeZombie () |
Static Protected Member Functions | |
| static Bool_t | Bidiagonalize (TMatrixD &v, TMatrixD &u, TVectorD &sDiag, TVectorD &oDiag) |
| Bidiagonalize the (m x n) - matrix a (stored in v) through a series of Householder transformations applied to the left (Q^T) and to the right (H) of a , so that A = Q . | |
| static void | Diag_1 (TMatrixD &v, TVectorD &sDiag, TVectorD &oDiag, Int_t k) |
| Step 1 in the matrix diagonalization. | |
| static void | Diag_2 (TVectorD &sDiag, TVectorD &oDiag, Int_t k, Int_t l) |
| Step 2 in the matrix diagonalization. | |
| static void | Diag_3 (TMatrixD &v, TMatrixD &u, TVectorD &sDiag, TVectorD &oDiag, Int_t k, Int_t l) |
| Step 3 in the matrix diagonalization. | |
| static Bool_t | Diagonalize (TMatrixD &v, TMatrixD &u, TVectorD &sDiag, TVectorD &oDiag) |
| Diagonalizes in an iterative fashion the bidiagonal matrix C as described through sDiag and oDiag, so that S' = U'^T . | |
| static void | SortSingular (TMatrixD &v, TMatrixD &u, TVectorD &sDiag) |
| Perform a permutation transformation on the diagonal matrix S', so that matrix S'' = U''^T . | |
Static Protected Member Functions inherited from TDecompBase | |
| static void | DiagProd (const TVectorD &diag, Double_t tol, Double_t &d1, Double_t &d2) |
Static Protected Member Functions inherited from TObject | |
| static void | SavePrimitiveConstructor (std::ostream &out, TClass *cl, const char *variable_name, const char *constructor_agrs="", Bool_t empty_line=kTRUE) |
| Save object constructor in the output stream "out". | |
| static void | SavePrimitiveDraw (std::ostream &out, const char *variable_name, Option_t *option=nullptr) |
| Save invocation of primitive Draw() method Skipped if option contains "nodraw" string. | |
| static TString | SavePrimitiveVector (std::ostream &out, const char *prefix, Int_t len, Double_t *arr, Bool_t empty_line=kFALSE) |
| Save array in the output stream "out" as vector. | |
Protected Attributes | |
| TVectorD | fSig |
| TMatrixD | fU |
| TMatrixD | fV |
Protected Attributes inherited from TDecompBase | |
| Int_t | fColLwb |
| Double_t | fCondition |
| Double_t | fDet1 |
| Double_t | fDet2 |
| Int_t | fRowLwb |
| Double_t | fTol |
Additional Inherited Members | |
Protected Types inherited from TDecompBase | |
| enum | { kWorkMax = 100 } |
| enum | EMatrixDecompStat { kInit = (1ULL << ( 14 )) , kPatternSet = (1ULL << ( 15 )) , kValuesSet = (1ULL << ( 16 )) , kMatrixSet = (1ULL << ( 17 )) , kDecomposed = (1ULL << ( 18 )) , kDetermined = (1ULL << ( 19 )) , kCondition = (1ULL << ( 20 )) , kSingular = (1ULL << ( 21 )) } |
Protected Types inherited from TObject | |
| enum | { kOnlyPrepStep = (1ULL << ( 3 )) } |
#include <TDecompSVD.h>
| Enumerator | |
|---|---|
| kWorkMax | |
Definition at line 43 of file TDecompSVD.h.
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inline |
Definition at line 45 of file TDecompSVD.h.
Constructor for (nrows x ncols) matrix.
Definition at line 51 of file TDecompSVD.cxx.
Constructor for ([row_lwb..row_upb] x [col_lwb..col_upb]) matrix.
Definition at line 65 of file TDecompSVD.cxx.
Constructor for general matrix A .
Definition at line 84 of file TDecompSVD.cxx.
| TDecompSVD::TDecompSVD | ( | const TDecompSVD & | another | ) |
Copy constructor.
Definition at line 113 of file TDecompSVD.cxx.
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inlineoverride |
Definition at line 50 of file TDecompSVD.h.
|
staticprotected |
Bidiagonalize the (m x n) - matrix a (stored in v) through a series of Householder transformations applied to the left (Q^T) and to the right (H) of a , so that A = Q .
C . H^T with matrix C bidiagonal. Q and H are orthogonal matrices .
Output: v - (n x n) - matrix H in the (n x n) part of v u - (m x m) - matrix Q^T sDiag - diagonal of the (m x n) C oDiag - off-diagonal elements of matrix C
Test code for the output:
Definition at line 191 of file TDecompSVD.cxx.
Definition at line 88 of file TDecompSVD.h.
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overridevirtual |
Matrix condition number.
Reimplemented from TDecompBase.
Definition at line 822 of file TDecompSVD.cxx.
Definition at line 88 of file TDecompSVD.h.
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overridevirtual |
SVD decomposition of matrix If the decomposition succeeds, bit kDecomposed is set , otherwise kSingular.
Implements TDecompBase.
Definition at line 122 of file TDecompSVD.cxx.
Matrix determinant det = d1*TMath::Power(2.,d2)
Reimplemented from TDecompBase.
Definition at line 845 of file TDecompSVD.cxx.
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staticprotected |
Step 1 in the matrix diagonalization.
Definition at line 373 of file TDecompSVD.cxx.
Step 2 in the matrix diagonalization.
Definition at line 397 of file TDecompSVD.cxx.
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staticprotected |
Step 3 in the matrix diagonalization.
Definition at line 415 of file TDecompSVD.cxx.
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staticprotected |
Diagonalizes in an iterative fashion the bidiagonal matrix C as described through sDiag and oDiag, so that S' = U'^T .
C . V' is diagonal. U' and V' are orthogonal matrices .
Output:
sDiag - diagonal of the (m x n) S'
return convergence flag: 0 -> no convergence 1 -> convergence
Test code for the output:
Definition at line 306 of file TDecompSVD.cxx.
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inlineoverrideprotectedvirtual |
Implements TDecompBase.
Definition at line 39 of file TDecompSVD.h.
Reconstruct the original matrix using the decomposition parts.
Definition at line 556 of file TDecompSVD.cxx.
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overridevirtual |
Implements TDecompBase.
Definition at line 869 of file TDecompSVD.cxx.
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overridevirtual |
Implements TDecompBase.
Definition at line 864 of file TDecompSVD.cxx.
Definition at line 59 of file TDecompSVD.h.
Definition at line 55 of file TDecompSVD.h.
Definition at line 57 of file TDecompSVD.h.
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inline |
Definition at line 82 of file TDecompSVD.h.
For a matrix A(m,n), its inverse A_inv is defined as A * A_inv = A_inv * A = unit (n x m) Ainv is returned .
Definition at line 902 of file TDecompSVD.cxx.
For a matrix A(m,n), its inverse A_inv is defined as A * A_inv = A_inv * A = unit The user should always supply a matrix of size (m x m) ! If m > n , only the (n x m) part of the returned (pseudo inverse) matrix should be used .
Definition at line 880 of file TDecompSVD.cxx.
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inlineoverridevirtual |
Reimplemented from TDecompBase.
Definition at line 88 of file TDecompSVD.h.
| TDecompSVD & TDecompSVD::operator= | ( | const TDecompSVD & | source | ) |
Assignment operator.
Definition at line 929 of file TDecompSVD.cxx.
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overridevirtual |
Set matrix to be decomposed.
Definition at line 581 of file TDecompSVD.cxx.
Implements TDecompBase.
Definition at line 66 of file TDecompSVD.h.
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overridevirtual |
Solve Ax=b assuming the SVD form of A is stored .
Solution returned in the matrix column cb b. If A is of size (m x n), input vector b should be of size (m), however, the solution, returned in b, will be in the first (n) elements .
For m > n , x is the least-squares solution of min(A . x - b)
Implements TDecompBase.
Definition at line 669 of file TDecompSVD.cxx.
Solve Ax=b assuming the SVD form of A is stored .
Solution returned in b. If A is of size (m x n), input vector b should be of size (m), however, the solution, returned in b, will be in the first (n) elements .
For m > n , x is the least-squares solution of min(A . x - b)
Implements TDecompBase.
Definition at line 614 of file TDecompSVD.cxx.
Perform a permutation transformation on the diagonal matrix S', so that matrix S'' = U''^T .
S' . V'' has diagonal elements ordered such that they do not increase.
Output:
Definition at line 496 of file TDecompSVD.cxx.
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overridevirtual |
Stream an object of class TObject.
Reimplemented from TDecompBase.
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inline |
Definition at line 88 of file TDecompSVD.h.
Implements TDecompBase.
Definition at line 72 of file TDecompSVD.h.
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overridevirtual |
Solve A^T x=b assuming the SVD form of A is stored . Solution returned in b.
Implements TDecompBase.
Definition at line 771 of file TDecompSVD.cxx.
Solve A^T x=b assuming the SVD form of A is stored . Solution returned in b.
Implements TDecompBase.
Definition at line 722 of file TDecompSVD.cxx.
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protected |
Definition at line 30 of file TDecompSVD.h.
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protected |
Definition at line 28 of file TDecompSVD.h.
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protected |
Definition at line 29 of file TDecompSVD.h.