58 fInterpolateLowerLimit(
true),
59 fInterpolateUpperLimit(
true),
60 fFittedLowerLimit(
false),
61 fFittedUpperLimit(
false),
62 fInterpolOption(kLinear),
65 fCLsCleanupThreshold(0.005)
79 fUseCLs(
other.fUseCLs),
80 fIsTwoSided(
other.fIsTwoSided),
81 fInterpolateLowerLimit(
other.fInterpolateLowerLimit),
82 fInterpolateUpperLimit(
other.fInterpolateUpperLimit),
83 fFittedLowerLimit(
other.fFittedLowerLimit),
84 fFittedUpperLimit(
other.fFittedUpperLimit),
85 fInterpolOption(
other.fInterpolOption),
86 fLowerLimitError(
other.fLowerLimitError),
87 fUpperLimitError(
other.fUpperLimitError),
88 fCLsCleanupThreshold(
other.fCLsCleanupThreshold),
89 fXValues(
other.fXValues)
95 for (
int i = 0; i <
nOther; ++i)
131 for (
int i=0; i <
nOther; ++i) {
154 fInterpolateLowerLimit(
true),
155 fInterpolateUpperLimit(
true),
156 fFittedLowerLimit(
false),
157 fFittedUpperLimit(
false),
158 fInterpolOption(kLinear),
159 fLowerLimitError(-1),
160 fUpperLimitError(-1),
161 fCLsCleanupThreshold(0.005)
215 if ( !
r->GetNullDistribution() && !
r->GetAltDistribution() ) {
225 const double x = *
itr;
235 coutE(
Eval) <<
"HypoTestInverterResult::ExclusionCleanup - invalid size of sampling distribution" << std::endl;
257 double * z =
const_cast<double *
>(&values[0] );
272 }
else if (
CLsobs >= 0.) {
320 if (
nOther == 0)
return true;
329 <<
" in " <<
GetName() << std::endl;
335 coutI(
Eval) <<
"HypoTestInverterResult::Add - merging also the expected p-values from pseudo-data" << std::endl;
342 for (
int i = 0; i <
nOther; ++i)
349 for (
int i = 0; i <
nOther; ++i) {
369 coutW(
Eval) <<
"HypoTestInverterResult::Add expected p values have been generated with different toys " <<
thisNToys <<
" , " <<
otherNToys << std::endl;
388 coutI(
Eval) <<
"HypoTestInverterResult::Add - new number of points is " <<
fXValues.size()
391 coutI(
Eval) <<
"HypoTestInverterResult::Add - new toys/point is "
413 if (!
r)
return false;
450 return result->CLsplusb();
465 return result->CLsError();
467 return result->CLsplusbError();
492 return result->CLsplusb();
516 return result->CLbError();
528 return result->CLsplusbError();
540 return result->CLsError();
563 const double tol = 1.E-12;
582 std::cout <<
"using graph for search " <<
lowSearch <<
" min " <<
axmin <<
" max " <<
axmax << std::endl;
587 const double *
y = graph.
GetY();
588 int n = graph.
GetN();
590 ooccoutE(
this,
Eval) <<
"HypoTestInverterResult::GetGraphX - need at least 2 points for interpolation (n=" <<
n <<
")\n";
591 return (
n>0) ?
y[0] : 0;
621 std::cout <<
"No range given - check if extrapolation is needed " << std::endl;
627 double yfirst = graph.
GetY()[0];
628 double ylast = graph.
GetY()[
n-1];
643 auto func = [&](
double x) {
650 brf.SetNpx(std::max(graph.
GetN()*2,100) );
653 <<
" , " << graph.
Eval(
xmax) <<
" target " <<
y0 << std::endl;
656 bool ret =
brf.Solve(100, 1.E-16, 1.E-6);
658 ooccoutE(
this,
Eval) <<
"HypoTestInverterResult - interpolation failed for interval [" <<
xmin <<
"," <<
xmax
660 <<
" target=" <<
y0 <<
" return inf" << std::endl
661 <<
"One may try to clean up invalid points using HypoTestInverterResult::ExclusionCleanup()." << std::endl;
664 double limit =
brf.Root();
667 if (
lowSearch) std::cout <<
"lower limit search : ";
668 else std::cout <<
"Upper limit search : ";
669 std::cout <<
"interpolation done between " <<
xmin <<
" and " <<
xmax
670 <<
"\n Found limit using RootFinder is " << limit << std::endl;
676 graph.
Write(
"graph");
685 std::cout <<
"do new interpolation dividing from " <<
index <<
" and " <<
y[
index] << std::endl;
722 coutW(
Eval) <<
"HypoTestInverterResult::FindInterpolatedLimit"
723 <<
" - not enough points to get the inverted interval - return "
732 std::vector<unsigned int>
index(
n );
736 for (
int i = 0; i <
n; ++i)
797 std::cout <<
" found xmin, xmax = " <<
xmin <<
" " <<
xmax <<
" for search " <<
lowSearch << std::endl;
822 std::cout <<
"finding " <<
lowSearch <<
" limit between " <<
xmin <<
" " <<
xmax << std::endl;
833 ooccoutD(
this,
Eval) <<
"HypoTestInverterResult::FindInterpolateLimit "
834 <<
"the computed " <<
limitType <<
" limit is " << limit <<
" +/- " << error << std::endl;
837 std::cout <<
"Found limit is " << limit <<
" +/- " << error << std::endl;
910 std::vector<unsigned int>
indx(
n);
974 coutW(
Eval) <<
"HypoTestInverterResult::CalculateEstimateError"
975 <<
"Empty result \n";
980 coutW(
Eval) <<
"HypoTestInverterResult::CalculateEstimateError"
981 <<
" only points - return its error\n";
991 std::cout <<
"calculate estimate error " <<
type <<
" between " <<
xmin <<
" and " <<
xmax << std::endl;
1013 if (graph.
GetN() < 2) {
1014 if (
np >= 2)
coutW(
Eval) <<
"HypoTestInverterResult::CalculateEstimatedError - no valid points - cannot estimate the " <<
type <<
" limit error " << std::endl;
1025 TF1 fct(
"fct",
"exp([0] * (x - [2] ) + [1] * (x-[2])**2)",
minX,
maxX);
1030 fct.SetParLimits(1,0, 10./
scale); }
1033 fct.SetParLimits(0,-100./
scale, 0);
1034 fct.SetParLimits(1,-100./
scale, 0); }
1036 if (graph.
GetN() < 3)
fct.FixParameter(1,0.);
1045 std::cout <<
"fitting for limit " <<
type <<
"between " <<
minX <<
" , " <<
maxX <<
" points considered " << graph.
GetN() << std::endl;
1066 coutW(
Eval) <<
"HypoTestInverterResult::CalculateEstimatedError - cannot estimate the " <<
type <<
" limit error " << std::endl;
1118 if (!
result)
return nullptr;
1119 return !
result->GetBackGroundIsAlt() ?
result->GetAltDistribution() :
result->GetNullDistribution();
1166 std::vector<double> values(
npoints);
1167 for (
int i = 0; i <
npoints; ++i) {
1170 if (
pval < 0) {
return nullptr;}
1173 return new SamplingDistribution(
"Asymptotic expected values",
"Asymptotic expected values",values);
1183 coutE(
Eval) <<
"HypoTestInverterResult::GetLimitDistribution"
1184 <<
" not enough points - return 0 " << std::endl;
1188 ooccoutD(
this,
Eval) <<
"HypoTestInverterResult - computing limit distribution...." << std::endl;
1195 for (
unsigned int i = 0; i <
distVec.size(); ++i) {
1207 ooccoutW(
this,
InputArguments) <<
"HypoTestInverterResult - set a minimum size of 10 for limit distribution" << std::endl;
1216 for (
int i = 0; i <
npoints; ++i) {
1221 std::vector<double>
pvalues =
distVec[i]->GetSamplingDistribution();
1231 p[0] = std::min( (
ibin+1) * 1./
double(
size), 1.0);
1247 std::vector<double> limits(
size);
1249 for (
int j = 0;
j <
size; ++
j ) {
1252 for (
int k = 0; k <
npoints ; ++k) {
1318 if (!
r->GetNullDistribution() && !
r->GetAltDistribution() ) {
1323 const std::vector<double> & values =
limitDist->GetSamplingDistribution();
1324 if (values.size() <= 1)
return 0;
1341 if (
option.Contains(
"P")) {
1353 ooccoutI(
this,
Eval) <<
"HypoTestInverterResult - cannot compute expected p value distribution for point, x = "
1354 <<
GetXValue(i) <<
" skip it " << std::endl;
1358 double *
x =
const_cast<double *
>(&values[0]);
1364 ooccoutE(
this,
Eval) <<
"HypoTestInverterResult - cannot compute limits , not enough points, n = " <<
g.GetN() << std::endl;
1376 const std::vector<double> & values =
limitDist->GetSamplingDistribution();
1377 double *
x =
const_cast<double *
>(&values[0]);
size_t size(const MatrixT &matrix)
retrieve the size of a square matrix
ROOT::Detail::TRangeCast< T, true > TRangeDynCast
TRangeDynCast is an adapter class that allows the typed iteration through a TCollection.
winID h TVirtualViewer3D TVirtualGLPainter p
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t Int_t Int_t Window_t TString Int_t GCValues_t GetPrimarySelectionOwner GetDisplay GetScreen GetColormap GetNativeEvent const char const char dpyName wid window const char font_name cursor keysym reg const char only_if_exist regb h Point_t winding char text const char depth char const char Int_t count const char ColorStruct_t color const char Pixmap_t Pixmap_t PictureAttributes_t attr const char char ret_data h unsigned char height h Atom_t Int_t ULong_t ULong_t unsigned char prop_list Atom_t Atom_t target
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t Int_t Int_t Window_t TString Int_t GCValues_t GetPrimarySelectionOwner GetDisplay GetScreen GetColormap GetNativeEvent const char const char dpyName wid window const char font_name cursor keysym reg const char only_if_exist regb h Point_t np
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t r
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t result
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t index
Option_t Option_t TPoint TPoint const char mode
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t Int_t Int_t Window_t TString Int_t GCValues_t GetPrimarySelectionOwner GetDisplay GetScreen GetColormap GetNativeEvent const char const char dpyName wid window const char font_name cursor keysym reg const char only_if_exist regb h Point_t winding char text const char depth char const char Int_t count const char ColorStruct_t color const char Pixmap_t Pixmap_t PictureAttributes_t attr const char char ret_data h unsigned char height h Atom_t Int_t ULong_t ULong_t unsigned char prop_list Atom_t Atom_t Atom_t Time_t type
Class for finding the root of a one dimensional function using the Brent algorithm.
Functor1D class for one-dimensional functions.
const_iterator begin() const
const_iterator end() const
virtual void removeAll()
Remove all arguments from our set, deleting them if we own them.
RooAbsArg * first() const
virtual bool addOwned(RooAbsArg &var, bool silent=false)
Add an argument and transfer the ownership to the collection.
virtual double getMax(const char *name=nullptr) const
Get maximum of currently defined range.
virtual double getMin(const char *name=nullptr) const
Get minimum of currently defined range.
Variable that can be changed from the outside.
static double GetExpectedPValues(double pnull, double palt, double nsigma, bool usecls, bool oneSided=true)
function given the null and the alt p value - return the expected one given the N - sigma value
HypoTestInverterResult class holds the array of hypothesis test results and compute a confidence inte...
bool fInterpolateUpperLimit
double GetYValue(int index) const
function to return the value of the confidence level for the i^th entry in the results
double LowerLimitEstimatedError()
rough estimation of the error on the computed bound of the confidence interval Estimate of lower limi...
double FindInterpolatedLimit(double target, bool lowSearch=false, double xmin=1, double xmax=0.0)
interpolate to find a limit value Use a linear or a spline interpolation depending on the interpolati...
double UpperLimitEstimatedError()
Estimate of lower limit error function evaluates only a rough error on the lower limit.
SamplingDistribution * GetSignalAndBackgroundTestStatDist(int index) const
get the signal and background test statistic distribution
double fCLsCleanupThreshold
HypoTestResult * GetResult(int index) const
return a pointer to the i^th result object
HypoTestInverterResult & operator=(const HypoTestInverterResult &other)
operator =
InterpolOption_t fInterpolOption
interpolation option (linear or spline)
int ArraySize() const
number of entries in the results array
bool fInterpolateLowerLimit
std::vector< double > fXValues
double CLsplusbError(int index) const
return the observed CLsplusb value for the i-th entry
double CLsError(int index) const
return the observed CLb value for the i-th entry
double GetGraphX(const TGraph &g, double y0, bool lowSearch, double &xmin, double &xmax) const
return the X value of the given graph for the target value y0 the graph is evaluated using linear int...
double CLbError(int index) const
return the observed CLb value for the i-th entry
double GetExpectedUpperLimit(double nsig=0, const char *opt="") const
get Limit value corresponding at the desired nsigma level (0) is median -1 sigma is 1 sigma
HypoTestInverterResult(const char *name=nullptr)
default constructor
double GetXValue(int index) const
function to return the value of the parameter of interest for the i^th entry in the results
double UpperLimit() override
return the interval upper limit
bool Add(const HypoTestInverterResult &otherResult)
merge with the content of another HypoTestInverterResult object
int FindClosestPointIndex(double target, int mode=0, double xtarget=0)
TList fExpPValues
list of expected sampling distribution for each point
double GetExpectedLowerLimit(double nsig=0, const char *opt="") const
get Limit value corresponding at the desired nsigma level (0) is median -1 sigma is 1 sigma
bool fIsTwoSided
two sided scan (look for lower/upper limit)
double CalculateEstimatedError(double target, bool lower=true, double xmin=1, double xmax=0.0)
Return an error estimate on the upper(lower) limit.
static int fgAsymptoticNumPoints
number of points used to build expected p-values
static double fgAsymptoticMaxSigma
max sigma value used to scan asymptotic expected p values
int ExclusionCleanup()
remove points that appear to have failed.
double LowerLimit() override
lower and upper bound of the confidence interval (to get upper/lower limits, multiply the size( = 1-c...
double CLs(int index) const
return the observed CLb value for the i-th entry
int FindIndex(double xvalue) const
find the index corresponding at the poi value xvalue If no points is found return -1 Note that a tole...
double GetYError(int index) const
function to return the estimated error on the value of the confidence level for the i^th entry in the...
double CLb(int index) const
return the observed CLb value for the i-th entry
TList fYObjects
list of HypoTestResult for each point
double GetExpectedLimit(double nsig, bool lower, const char *opt="") const
get expected limit (lower/upper) depending on the flag for asymptotic is a special case (the distribu...
SamplingDistribution * GetExpectedPValueDist(int index) const
return expected distribution of p-values (Cls or Clsplusb)
double CLsplusb(int index) const
return the observed CLsplusb value for the i-th entry
SamplingDistribution * GetLimitDistribution(bool lower) const
get the limit distribution (lower/upper depending on the flag) by interpolating the expected p values...
SamplingDistribution * GetNullTestStatDist(int index) const
same in terms of alt and null
SamplingDistribution * GetBackgroundTestStatDist(int index) const
get the background test statistic distribution
~HypoTestInverterResult() override
destructor
HypoTestResult is a base class for results from hypothesis tests.
TObject * Clone(const char *newname=nullptr) const override
clone method, required since some data members cannot rely on the streamers to copy them
This class simply holds a sampling distribution of some test statistic.
const std::vector< double > & GetSamplingDistribution() const
Get test statistics values.
SimpleInterval is a concrete implementation of the ConfInterval interface.
double fUpperLimit
upper interval limit
RooArgSet fParameters
set containing the parameter of interest
double ConfidenceLevel() const override
return the confidence interval
double fLowerLimit
lower interval limit
double fConfidenceLevel
confidence level
SimpleInterval & operator=(const SimpleInterval &other)
default constructor
virtual void SetMarkerStyle(Style_t mstyle=1)
Set the marker style.
virtual void RemoveAll(TCollection *col)
Remove all objects in collection col from this collection.
virtual void SetOwner(Bool_t enable=kTRUE)
Set whether this collection is the owner (enable==true) of its content.
virtual Int_t GetSize() const
Return the capacity of the collection, i.e.
static TFile * Open(const char *name, Option_t *option="", const char *ftitle="", Int_t compress=ROOT::RCompressionSetting::EDefaults::kUseCompiledDefault, Int_t netopt=0)
Create / open a file.
A TGraphErrors is a TGraph with error bars.
void Print(Option_t *chopt="") const override
Print graph and errors values.
virtual void SetPointError(Double_t ex, Double_t ey)
Set ex and ey values for point pointed by the mouse.
A TGraph is an object made of two arrays X and Y with npoints each.
virtual void SetPoint(Int_t i, Double_t x, Double_t y)
Set x and y values for point number i.
virtual TFitResultPtr Fit(const char *formula, Option_t *option="", Option_t *goption="", Axis_t xmin=0, Axis_t xmax=0)
Fit this graph with the global function named fname.
virtual Double_t Eval(Double_t x, TSpline *spline=nullptr, Option_t *option="") const
Interpolate points in this graph at x using a TSpline.
void Draw(Option_t *chopt="") override
Draw this graph with its current attributes.
void Add(TObject *obj) override
TObject * First() const override
Return the first object in the list. Returns 0 when list is empty.
void Delete(Option_t *option="") override
Remove all objects from the list AND delete all heap based objects.
TObject * At(Int_t idx) const override
Returns the object at position idx. Returns 0 if idx is out of range.
const char * GetName() const override
Returns name of object.
virtual TObject * Clone(const char *newname="") const
Make a clone of an object using the Streamer facility.
virtual Int_t Write(const char *name=nullptr, Int_t option=0, Int_t bufsize=0)
Write this object to the current directory.
virtual TObject * RemoveAt(Int_t idx)
static TString Format(const char *fmt,...)
Static method which formats a string using a printf style format descriptor and return a TString.
double normal_cdf(double x, double sigma=1, double x0=0)
Cumulative distribution function of the normal (Gaussian) distribution (lower tail).
The namespace RooFit contains mostly switches that change the behaviour of functions of PDFs (or othe...
Namespace for the RooStats classes.
void SortItr(Iterator first, Iterator last, IndexIterator index, Bool_t down=kTRUE)
Sort the n1 elements of the Short_t array defined by its iterators.
Double_t QuietNaN()
Returns a quiet NaN as defined by IEEE 754.
Double_t Floor(Double_t x)
Rounds x downward, returning the largest integral value that is not greater than x.
T MinElement(Long64_t n, const T *a)
Returns minimum of array a of length n.
void Quantiles(Int_t n, Int_t nprob, Double_t *x, Double_t *quantiles, Double_t *prob, Bool_t isSorted=kTRUE, Int_t *index=nullptr, Int_t type=7)
Computes sample quantiles, corresponding to the given probabilities.
Bool_t AreEqualRel(Double_t af, Double_t bf, Double_t relPrec)
Comparing floating points.
Bool_t AreEqualAbs(Double_t af, Double_t bf, Double_t epsilon)
Comparing floating points.
T MaxElement(Long64_t n, const T *a)
Returns maximum of array a of length n.
Long64_t BinarySearch(Long64_t n, const T *array, T value)
Binary search in an array of n values to locate value.
Double_t Infinity()
Returns an infinity as defined by the IEEE standard.
static uint64_t sum(uint64_t i)