TMVA_SOFIE_Keras.C File Reference

Detailed Description

This macro provides a simple example for the parsing of Keras .h5 file into RModel object and further generating the .hxx header files for inference.

 
using namespace TMVA::Experimental;
 
TString pythonSrc = "\
import os\n\
os.environ['TF_CPP_MIN_LOG_LEVEL'] = '3'\n\
\n\
import numpy as np\n\
from tensorflow.keras.models import Model\n\
from tensorflow.keras.layers import Input,Dense,Activation,ReLU\n\
from tensorflow.keras.optimizers import SGD\n\
\n\
input=Input(shape=(64,),batch_size=4)\n\
x=Dense(32)(input)\n\
x=Activation('relu')(x)\n\
x=Dense(16,activation='relu')(x)\n\
x=Dense(8,activation='relu')(x)\n\
x=Dense(4)(x)\n\
output=ReLU()(x)\n\
model=Model(inputs=input,outputs=output)\n\
\n\
randomGenerator=np.random.RandomState(0)\n\
x_train=randomGenerator.rand(4,64)\n\
y_train=randomGenerator.rand(4,4)\n\
\n\
model.compile(loss='mean_squared_error', optimizer=SGD(learning_rate=0.01))\n\
model.fit(x_train, y_train, epochs=5, batch_size=4)\n\
model.save('KerasModel.h5')\n";
 
 
void TMVA_SOFIE_Keras(){
 
    //Running the Python script to generate Keras .h5 file
    TMVA::PyMethodBase::PyInitialize();
 
    TMacro m;
    m.AddLine(pythonSrc);
    m.SaveSource("make_keras_model.py");
    gSystem->Exec(TMVA::Python_Executable() + " make_keras_model.py");
 
    //Parsing the saved Keras .h5 file into RModel object
    SOFIE::RModel model = SOFIE::PyKeras::Parse("KerasModel.h5");
 
 
    //Generating inference code
    model.Generate();
    model.OutputGenerated("KerasModel.hxx");
 
    //Printing required input tensors
    std::cout<<"\n\n";
    model.PrintRequiredInputTensors();
 
    //Printing initialized tensors (weights)
    std::cout<<"\n\n";
    model.PrintInitializedTensors();
 
    //Printing intermediate tensors
    std::cout<<"\n\n";
    model.PrintIntermediateTensors();
 
    //Checking if tensor already exist in model
    std::cout<<"\n\nTensor \"dense2bias0\" already exist: "<<std::boolalpha<<model.CheckIfTensorAlreadyExist("dense2bias0")<<"\n\n";
    std::vector<size_t> tensorShape = model.GetTensorShape("dense2bias0");
    std::cout<<"Shape of tensor \"dense2bias0\": ";
    for(auto& it:tensorShape){
        std::cout<<it<<",";
    }
    std::cout<<"\n\nData type of tensor \"dense2bias0\": ";
    SOFIE::ETensorType tensorType = model.GetTensorType("dense2bias0");
    std::cout<<SOFIE::ConvertTypeToString(tensorType);
 
    //Printing generated inference code
    std::cout<<"\n\n";
    model.PrintGenerated();
}

 
Epoch 1/5
 
1/1 [==============================] - ETA: 0s - loss: 0.3567␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈
1/1 [==============================] - 1s 612ms/step - loss: 0.3567
Epoch 2/5
 
1/1 [==============================] - ETA: 0s - loss: 0.3531␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈
1/1 [==============================] - 0s 3ms/step - loss: 0.3531
Epoch 3/5
 
1/1 [==============================] - ETA: 0s - loss: 0.3498␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈
1/1 [==============================] - 0s 3ms/step - loss: 0.3498
Epoch 4/5
 
1/1 [==============================] - ETA: 0s - loss: 0.3467␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈
1/1 [==============================] - 0s 3ms/step - loss: 0.3467
Epoch 5/5
 
1/1 [==============================] - ETA: 0s - loss: 0.3436␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈␈
1/1 [==============================] - 0s 3ms/step - loss: 0.3436
 
 
Model requires following inputs:
Fully Specified Tensor name: input1 type: float shape: [4,64]
 
 
Model initialized the following tensors:
Tensor name: "dense3bias0" type: float shape: [4]
Tensor name: "dense3kernel0"  type: float shape: [8,4]
Tensor name: "dense2bias0" type: float shape: [8]
Tensor name: "dense2kernel0"  type: float shape: [16,8]
Tensor name: "dense1bias0" type: float shape: [16]
Tensor name: "dense1kernel0"  type: float shape: [32,16]
Tensor name: "densebias0"  type: float shape: [32]
Tensor name: "densekernel0"   type: float shape: [64,32]
 
 
Model specify the following intermediate tensors:
Tensor name: "reluRelu0"   type: float shape: [4,4]
Tensor name: "dense3BiasAdd0" type: float shape: [4,4]
Tensor name: "dense2Dense" type: float shape: [4,8]
Tensor name: "dense2Relu0" type: float shape: [4,8]
Tensor name: "dense1Dense" type: float shape: [4,16]
Tensor name: "dense1bias0bcast"  type: float shape: [4,16]
Tensor name: "dense3bias0bcast"  type: float shape: [4,4]
Tensor name: "dense1Relu0" type: float shape: [4,16]
Tensor name: "activationRelu0"   type: float shape: [4,32]
Tensor name: "denseBiasAdd0"  type: float shape: [4,32]
Tensor name: "dense2bias0bcast"  type: float shape: [4,8]
Tensor name: "densebias0bcast"   type: float shape: [4,32]
 
 
Tensor "dense2bias0" already exist: true
 
Shape of tensor "dense2bias0": 8,
 
Data type of tensor "dense2bias0": float
 
//Code generated automatically by TMVA for Inference of Model file [KerasModel.h5] at [Mon Sep 11 20:39:53 2023] 
 
#ifndef TMVA_SOFIE_KERASMODEL
#define TMVA_SOFIE_KERASMODEL
 
#include<algorithm>
#include<vector>
#include "TMVA/SOFIE_common.hxx"
#include <fstream>
 
namespace TMVA_SOFIE_KerasModel{
namespace BLAS{
   extern "C" void sgemv_(const char * trans, const int * m, const int * n, const float * alpha, const float * A,
                          const int * lda, const float * X, const int * incx, const float * beta, const float * Y, const int * incy);
   extern "C" void sgemm_(const char * transa, const char * transb, const int * m, const int * n, const int * k,
                          const float * alpha, const float * A, const int * lda, const float * B, const int * ldb,
                          const float * beta, float * C, const int * ldc);
}//BLAS
struct Session {
std::vector<float> fTensor_dense3bias0 = std::vector<float>(4);
float * tensor_dense3bias0 = fTensor_dense3bias0.data();
std::vector<float> fTensor_dense3kernel0 = std::vector<float>(32);
float * tensor_dense3kernel0 = fTensor_dense3kernel0.data();
std::vector<float> fTensor_dense2bias0 = std::vector<float>(8);
float * tensor_dense2bias0 = fTensor_dense2bias0.data();
std::vector<float> fTensor_dense2kernel0 = std::vector<float>(128);
float * tensor_dense2kernel0 = fTensor_dense2kernel0.data();
std::vector<float> fTensor_dense1bias0 = std::vector<float>(16);
float * tensor_dense1bias0 = fTensor_dense1bias0.data();
std::vector<float> fTensor_dense1kernel0 = std::vector<float>(512);
float * tensor_dense1kernel0 = fTensor_dense1kernel0.data();
std::vector<float> fTensor_densebias0 = std::vector<float>(32);
float * tensor_densebias0 = fTensor_densebias0.data();
std::vector<float> fTensor_densekernel0 = std::vector<float>(2048);
float * tensor_densekernel0 = fTensor_densekernel0.data();
std::vector<float> fTensor_reluRelu0 = std::vector<float>(16);
float * tensor_reluRelu0 = fTensor_reluRelu0.data();
std::vector<float> fTensor_dense3BiasAdd0 = std::vector<float>(16);
float * tensor_dense3BiasAdd0 = fTensor_dense3BiasAdd0.data();
std::vector<float> fTensor_dense2Dense = std::vector<float>(32);
float * tensor_dense2Dense = fTensor_dense2Dense.data();
std::vector<float> fTensor_dense2Relu0 = std::vector<float>(32);
float * tensor_dense2Relu0 = fTensor_dense2Relu0.data();
std::vector<float> fTensor_dense1Dense = std::vector<float>(64);
float * tensor_dense1Dense = fTensor_dense1Dense.data();
std::vector<float> fTensor_dense1bias0bcast = std::vector<float>(64);
float * tensor_dense1bias0bcast = fTensor_dense1bias0bcast.data();
std::vector<float> fTensor_dense3bias0bcast = std::vector<float>(16);
float * tensor_dense3bias0bcast = fTensor_dense3bias0bcast.data();
std::vector<float> fTensor_dense1Relu0 = std::vector<float>(64);
float * tensor_dense1Relu0 = fTensor_dense1Relu0.data();
std::vector<float> fTensor_activationRelu0 = std::vector<float>(128);
float * tensor_activationRelu0 = fTensor_activationRelu0.data();
std::vector<float> fTensor_denseBiasAdd0 = std::vector<float>(128);
float * tensor_denseBiasAdd0 = fTensor_denseBiasAdd0.data();
std::vector<float> fTensor_dense2bias0bcast = std::vector<float>(32);
float * tensor_dense2bias0bcast = fTensor_dense2bias0bcast.data();
std::vector<float> fTensor_densebias0bcast = std::vector<float>(128);
float * tensor_densebias0bcast = fTensor_densebias0bcast.data();
 
 
Session(std::string filename ="") {
   if (filename.empty()) filename = "KerasModel.dat";
   std::ifstream f;
   f.open(filename);
   if (!f.is_open()){
      throw std::runtime_error("tmva-sofie failed to open file for input weights");
   }
   std::string tensor_name;
   int length;
   f >> tensor_name >> length;
   if (tensor_name != "tensor_dense3bias0" ) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor name; expected name is tensor_dense3bias0 , read " + tensor_name;
      throw std::runtime_error(err_msg);
    }
   if (length != 4) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor size; expected size is 4 , read " + std::to_string(length) ;
      throw std::runtime_error(err_msg);
    }
    for (int i =0; i < length; ++i) 
       f >> tensor_dense3bias0[i];
   f >> tensor_name >> length;
   if (tensor_name != "tensor_dense3kernel0" ) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor name; expected name is tensor_dense3kernel0 , read " + tensor_name;
      throw std::runtime_error(err_msg);
    }
   if (length != 32) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor size; expected size is 32 , read " + std::to_string(length) ;
      throw std::runtime_error(err_msg);
    }
    for (int i =0; i < length; ++i) 
       f >> tensor_dense3kernel0[i];
   f >> tensor_name >> length;
   if (tensor_name != "tensor_dense2bias0" ) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor name; expected name is tensor_dense2bias0 , read " + tensor_name;
      throw std::runtime_error(err_msg);
    }
   if (length != 8) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor size; expected size is 8 , read " + std::to_string(length) ;
      throw std::runtime_error(err_msg);
    }
    for (int i =0; i < length; ++i) 
       f >> tensor_dense2bias0[i];
   f >> tensor_name >> length;
   if (tensor_name != "tensor_dense2kernel0" ) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor name; expected name is tensor_dense2kernel0 , read " + tensor_name;
      throw std::runtime_error(err_msg);
    }
   if (length != 128) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor size; expected size is 128 , read " + std::to_string(length) ;
      throw std::runtime_error(err_msg);
    }
    for (int i =0; i < length; ++i) 
       f >> tensor_dense2kernel0[i];
   f >> tensor_name >> length;
   if (tensor_name != "tensor_dense1bias0" ) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor name; expected name is tensor_dense1bias0 , read " + tensor_name;
      throw std::runtime_error(err_msg);
    }
   if (length != 16) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor size; expected size is 16 , read " + std::to_string(length) ;
      throw std::runtime_error(err_msg);
    }
    for (int i =0; i < length; ++i) 
       f >> tensor_dense1bias0[i];
   f >> tensor_name >> length;
   if (tensor_name != "tensor_dense1kernel0" ) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor name; expected name is tensor_dense1kernel0 , read " + tensor_name;
      throw std::runtime_error(err_msg);
    }
   if (length != 512) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor size; expected size is 512 , read " + std::to_string(length) ;
      throw std::runtime_error(err_msg);
    }
    for (int i =0; i < length; ++i) 
       f >> tensor_dense1kernel0[i];
   f >> tensor_name >> length;
   if (tensor_name != "tensor_densebias0" ) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor name; expected name is tensor_densebias0 , read " + tensor_name;
      throw std::runtime_error(err_msg);
    }
   if (length != 32) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor size; expected size is 32 , read " + std::to_string(length) ;
      throw std::runtime_error(err_msg);
    }
    for (int i =0; i < length; ++i) 
       f >> tensor_densebias0[i];
   f >> tensor_name >> length;
   if (tensor_name != "tensor_densekernel0" ) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor name; expected name is tensor_densekernel0 , read " + tensor_name;
      throw std::runtime_error(err_msg);
    }
   if (length != 2048) {
      std::string err_msg = "TMVA-SOFIE failed to read the correct tensor size; expected size is 2048 , read " + std::to_string(length) ;
      throw std::runtime_error(err_msg);
    }
    for (int i =0; i < length; ++i) 
       f >> tensor_densekernel0[i];
   f.close();
   {
      std::vector<size_t> oldShape = { 32 };
      std::vector<size_t> newShape = { 4 , 32 };
      float * newData_ptr = TMVA::Experimental::SOFIE::UTILITY::Unidirectional_broadcast<float>(tensor_densebias0, oldShape, newShape);
      std::copy(newData_ptr, newData_ptr + 128, tensor_densebias0bcast);
      delete [] newData_ptr;
   }
   {
      std::vector<size_t> oldShape = { 16 };
      std::vector<size_t> newShape = { 4 , 16 };
      float * newData_ptr = TMVA::Experimental::SOFIE::UTILITY::Unidirectional_broadcast<float>(tensor_dense1bias0, oldShape, newShape);
      std::copy(newData_ptr, newData_ptr + 64, tensor_dense1bias0bcast);
      delete [] newData_ptr;
   }
   {
      std::vector<size_t> oldShape = { 8 };
      std::vector<size_t> newShape = { 4 , 8 };
      float * newData_ptr = TMVA::Experimental::SOFIE::UTILITY::Unidirectional_broadcast<float>(tensor_dense2bias0, oldShape, newShape);
      std::copy(newData_ptr, newData_ptr + 32, tensor_dense2bias0bcast);
      delete [] newData_ptr;
   }
   {
      std::vector<size_t> oldShape = { 4 };
      std::vector<size_t> newShape = { 4 , 4 };
      float * newData_ptr = TMVA::Experimental::SOFIE::UTILITY::Unidirectional_broadcast<float>(tensor_dense3bias0, oldShape, newShape);
      std::copy(newData_ptr, newData_ptr + 16, tensor_dense3bias0bcast);
      delete [] newData_ptr;
   }
}
 
std::vector<float> infer(float* tensor_input1){
 
//--------- Gemm
   char op_0_transA = 'n';
   char op_0_transB = 'n';
   int op_0_m = 4;
   int op_0_n = 32;
   int op_0_k = 64;
   float op_0_alpha = 1;
   float op_0_beta = 1;
   int op_0_lda = 64;
   int op_0_ldb = 32;
   std::copy(tensor_densebias0bcast, tensor_densebias0bcast + 128, tensor_denseBiasAdd0);
   BLAS::sgemm_(&op_0_transB, &op_0_transA, &op_0_n, &op_0_m, &op_0_k, &op_0_alpha, tensor_densekernel0, &op_0_ldb, tensor_input1, &op_0_lda, &op_0_beta, tensor_denseBiasAdd0, &op_0_n);
 
//------ RELU
   for (int id = 0; id < 128 ; id++){
      tensor_activationRelu0[id] = ((tensor_denseBiasAdd0[id] > 0 )? tensor_denseBiasAdd0[id] : 0);
   }
 
//--------- Gemm
   char op_2_transA = 'n';
   char op_2_transB = 'n';
   int op_2_m = 4;
   int op_2_n = 16;
   int op_2_k = 32;
   float op_2_alpha = 1;
   float op_2_beta = 1;
   int op_2_lda = 32;
   int op_2_ldb = 16;
   std::copy(tensor_dense1bias0bcast, tensor_dense1bias0bcast + 64, tensor_dense1Dense);
   BLAS::sgemm_(&op_2_transB, &op_2_transA, &op_2_n, &op_2_m, &op_2_k, &op_2_alpha, tensor_dense1kernel0, &op_2_ldb, tensor_activationRelu0, &op_2_lda, &op_2_beta, tensor_dense1Dense, &op_2_n);
 
//------ RELU
   for (int id = 0; id < 64 ; id++){
      tensor_dense1Relu0[id] = ((tensor_dense1Dense[id] > 0 )? tensor_dense1Dense[id] : 0);
   }
 
//--------- Gemm
   char op_4_transA = 'n';
   char op_4_transB = 'n';
   int op_4_m = 4;
   int op_4_n = 8;
   int op_4_k = 16;
   float op_4_alpha = 1;
   float op_4_beta = 1;
   int op_4_lda = 16;
   int op_4_ldb = 8;
   std::copy(tensor_dense2bias0bcast, tensor_dense2bias0bcast + 32, tensor_dense2Dense);
   BLAS::sgemm_(&op_4_transB, &op_4_transA, &op_4_n, &op_4_m, &op_4_k, &op_4_alpha, tensor_dense2kernel0, &op_4_ldb, tensor_dense1Relu0, &op_4_lda, &op_4_beta, tensor_dense2Dense, &op_4_n);
 
//------ RELU
   for (int id = 0; id < 32 ; id++){
      tensor_dense2Relu0[id] = ((tensor_dense2Dense[id] > 0 )? tensor_dense2Dense[id] : 0);
   }
 
//--------- Gemm
   char op_6_transA = 'n';
   char op_6_transB = 'n';
   int op_6_m = 4;
   int op_6_n = 4;
   int op_6_k = 8;
   float op_6_alpha = 1;
   float op_6_beta = 1;
   int op_6_lda = 8;
   int op_6_ldb = 4;
   std::copy(tensor_dense3bias0bcast, tensor_dense3bias0bcast + 16, tensor_dense3BiasAdd0);
   BLAS::sgemm_(&op_6_transB, &op_6_transA, &op_6_n, &op_6_m, &op_6_k, &op_6_alpha, tensor_dense3kernel0, &op_6_ldb, tensor_dense2Relu0, &op_6_lda, &op_6_beta, tensor_dense3BiasAdd0, &op_6_n);
 
//------ RELU
   for (int id = 0; id < 16 ; id++){
      tensor_reluRelu0[id] = ((tensor_dense3BiasAdd0[id] > 0 )? tensor_dense3BiasAdd0[id] : 0);
   }
   std::vector<float> ret (tensor_reluRelu0, tensor_reluRelu0 + 16);
   return ret;
}
};
} //TMVA_SOFIE_KerasModel
 
#endif  // TMVA_SOFIE_KERASMODEL

Author

Sanjiban Sengupta

Definition in file TMVA_SOFIE_Keras.C.