41#include <unordered_map>
56 auto charBuf =
reinterpret_cast<const unsigned char *
>(
fBuffer);
57 auto checksumBuf =
const_cast<unsigned char *
>(charBuf) + GetDataSize();
58 std::uint64_t xxhash3;
70 return R__FAIL(
"page checksum verification failed, data corruption detected");
77 return R__FAIL(
"invalid attempt to extract non-existing page checksum");
79 assert(fBufferSize >= kNBytesPageChecksum);
80 std::uint64_t checksum;
82 reinterpret_cast<const unsigned char *
>(
fBuffer) + fBufferSize - kNBytesPageChecksum, checksum);
91 auto [itr,
_] = fColumnInfos.emplace(physicalColumnId, std::vector<RColumnInfo>());
92 for (
auto &columnInfo : itr->second) {
93 if (columnInfo.fElementId == elementId) {
94 columnInfo.fRefCounter++;
98 itr->second.emplace_back(
RColumnInfo{elementId, 1});
104 auto itr = fColumnInfos.find(physicalColumnId);
106 for (std::size_t i = 0; i < itr->second.size(); ++i) {
107 if (itr->second[i].fElementId != elementId)
110 itr->second[i].fRefCounter--;
111 if (itr->second[i].fRefCounter == 0) {
112 itr->second.erase(itr->second.begin() + i);
113 if (itr->second.empty()) {
114 fColumnInfos.erase(itr);
125 for (
const auto &[physicalColumnId,
_] : fColumnInfos)
126 result.insert(physicalColumnId);
153std::unique_ptr<ROOT::Experimental::Internal::RPageSource>
157 if (ntupleName.empty()) {
160 if (location.empty()) {
163 if (location.find(
"daos://") == 0)
165 return std::make_unique<RPageSourceDaos>(ntupleName, location, options);
170 return std::make_unique<RPageSourceFile>(ntupleName, location, options);
201 fHasStructure =
true;
208 GetExclDescriptorGuard().MoveIn(AttachImpl());
214 auto clone = CloneImpl();
216 clone->GetExclDescriptorGuard().MoveIn(std::move(*GetSharedDescriptorGuard()->Clone()));
217 clone->fHasStructure =
true;
218 clone->fIsAttached =
true;
225 return GetSharedDescriptorGuard()->GetNEntries();
230 return GetSharedDescriptorGuard()->GetNElements(columnHandle.
fPhysicalId);
236 UnzipClusterImpl(cluster);
243 const auto clusterId = cluster->
GetId();
244 auto descriptorGuard = GetSharedDescriptorGuard();
245 const auto &clusterDescriptor = descriptorGuard->GetClusterDescriptor(clusterId);
247 fPreloadedClusters[clusterDescriptor.GetFirstEntryIndex()] = clusterId;
249 std::atomic<bool> foundChecksumFailure{
false};
251 std::vector<std::unique_ptr<RColumnElementBase>> allElements;
253 for (
const auto columnId : columnsInCluster) {
257 if (!fActivePhysicalColumns.HasColumnInfos(columnId))
259 const auto &columnInfos = fActivePhysicalColumns.GetColumnInfos(columnId);
261 for (
const auto &info : columnInfos) {
264 const auto &pageRange = clusterDescriptor.GetPageRange(columnId);
265 std::uint64_t pageNo = 0;
266 std::uint64_t firstInPage = 0;
267 for (
const auto &pi : pageRange.fPageInfos) {
272 sealedPage.
SetBufferSize(pi.fLocator.fBytesOnStorage + pi.fHasChecksum * kNBytesPageChecksum);
273 sealedPage.
SetBuffer(onDiskPage->GetAddress());
276 auto taskFunc = [
this, columnId, clusterId, firstInPage, sealedPage, element = allElements.back().get(),
277 &foundChecksumFailure,
278 indexOffset = clusterDescriptor.GetColumnRange(columnId).fFirstElementIndex]() {
280 auto rv = UnsealPage(sealedPage, *element);
282 foundChecksumFailure =
true;
285 auto newPage = rv.Unwrap();
286 fCounters->fSzUnzip.Add(element->GetSize() * sealedPage.
GetNElements());
289 fPagePool.PreloadPage(std::move(newPage), keyPagePool);
292 fTaskScheduler->AddTask(taskFunc);
294 firstInPage += pi.fNElements;
298 fCounters->fNPageUnsealed.Add(pageNo);
302 fTaskScheduler->Wait();
304 if (foundChecksumFailure) {
305 throw RException(
R__FAIL(
"page checksum verification failed, data corruption detected"));
313 auto descriptorGuard = GetSharedDescriptorGuard();
314 const auto &clusterDesc = descriptorGuard->GetClusterDescriptor(clusterKey.
fClusterId);
317 if (clusterDesc.GetColumnRange(physicalColumnId).fIsSuppressed)
320 const auto &pageRange = clusterDesc.GetPageRange(physicalColumnId);
322 for (
const auto &pageInfo : pageRange.fPageInfos) {
328 perPageFunc(physicalColumnId, pageNo, pageInfo);
337 if (fLastUsedCluster == clusterId)
340 NTupleSize_t firstEntryIndex = GetSharedDescriptorGuard()->GetClusterDescriptor(clusterId).GetFirstEntryIndex();
341 auto itr = fPreloadedClusters.begin();
342 while ((itr != fPreloadedClusters.end()) && (itr->first < firstEntryIndex)) {
343 fPagePool.Evict(itr->second);
344 itr = fPreloadedClusters.erase(itr);
346 std::size_t poolWindow = 0;
347 while ((itr != fPreloadedClusters.end()) && (poolWindow < 2 * fOptions.GetClusterBunchSize())) {
351 while (itr != fPreloadedClusters.end()) {
352 fPagePool.Evict(itr->second);
353 itr = fPreloadedClusters.erase(itr);
356 fLastUsedCluster = clusterId;
365 if (!cachedPageRef.Get().IsNull()) {
366 UpdateLastUsedCluster(cachedPageRef.Get().GetClusterInfo().GetId());
367 return cachedPageRef;
370 std::uint64_t idxInCluster;
373 auto descriptorGuard = GetSharedDescriptorGuard();
374 clusterInfo.
fClusterId = descriptorGuard->FindClusterId(columnId, globalIndex);
377 throw RException(
R__FAIL(
"entry with index " + std::to_string(globalIndex) +
" out of bounds"));
379 const auto &clusterDescriptor = descriptorGuard->GetClusterDescriptor(clusterInfo.
fClusterId);
380 const auto &columnRange = clusterDescriptor.GetColumnRange(columnId);
381 if (columnRange.fIsSuppressed)
387 clusterInfo.
fPageInfo = clusterDescriptor.GetPageRange(columnId).Find(idxInCluster);
393 UpdateLastUsedCluster(clusterInfo.
fClusterId);
394 return LoadPageImpl(columnHandle, clusterInfo, idxInCluster);
401 const auto idxInCluster = clusterIndex.
GetIndex();
405 if (!cachedPageRef.Get().IsNull()) {
406 UpdateLastUsedCluster(clusterId);
407 return cachedPageRef;
415 auto descriptorGuard = GetSharedDescriptorGuard();
416 const auto &clusterDescriptor = descriptorGuard->GetClusterDescriptor(clusterId);
417 const auto &columnRange = clusterDescriptor.GetColumnRange(columnId);
418 if (columnRange.fIsSuppressed)
423 clusterInfo.
fPageInfo = clusterDescriptor.GetPageRange(columnId).Find(idxInCluster);
429 UpdateLastUsedCluster(clusterInfo.
fClusterId);
430 return LoadPageImpl(columnHandle, clusterInfo, idxInCluster);
436 fCounters = std::make_unique<RCounters>(
RCounters{
440 "volume read from storage (required)"),
442 "volume read from storage (overhead)"),
445 "number of partial clusters preloaded from storage"),
448 "number of pages unzipped and decoded"),
451 "wall clock time spent decompressing"),
453 "CPU time spent reading"),
455 "CPU time spent decompressing"),
457 "bwRead",
"MB/s",
"bandwidth compressed bytes read per second", fMetrics,
459 if (
const auto szReadPayload = metrics.GetLocalCounter(
"szReadPayload")) {
460 if (
const auto szReadOverhead = metrics.GetLocalCounter(
"szReadOverhead")) {
461 if (
const auto timeWallRead = metrics.GetLocalCounter(
"timeWallRead")) {
462 if (
auto walltime = timeWallRead->GetValueAsInt()) {
463 double payload = szReadPayload->GetValueAsInt();
464 double overhead = szReadOverhead->GetValueAsInt();
466 return {
true, (1000. * (payload + overhead) / walltime)};
474 "bwReadUnzip",
"MB/s",
"bandwidth uncompressed bytes read per second", fMetrics,
477 if (
const auto timeWallRead = metrics.
GetLocalCounter(
"timeWallRead")) {
478 if (
auto walltime = timeWallRead->GetValueAsInt()) {
481 return {
true, 1000. * unzip / walltime};
488 "bwUnzip",
"MB/s",
"decompression bandwidth of uncompressed bytes per second", fMetrics,
491 if (
const auto timeWallUnzip = metrics.
GetLocalCounter(
"timeWallUnzip")) {
492 if (
auto walltime = timeWallUnzip->GetValueAsInt()) {
495 return {
true, 1000. * unzip / walltime};
502 "rtReadEfficiency",
"",
"ratio of payload over all bytes read", fMetrics,
504 if (
const auto szReadPayload = metrics.
GetLocalCounter(
"szReadPayload")) {
505 if (
const auto szReadOverhead = metrics.
GetLocalCounter(
"szReadOverhead")) {
506 if (
auto payload = szReadPayload->GetValueAsInt()) {
508 return {
true, 1. / (1. + (1. * szReadOverhead->GetValueAsInt()) / payload)};
515 "rtCompression",
"",
"ratio of compressed bytes / uncompressed bytes", fMetrics,
517 if (
const auto szReadPayload = metrics.
GetLocalCounter(
"szReadPayload")) {
519 if (
auto unzip = szUnzip->GetValueAsInt()) {
520 return {
true, (1. * szReadPayload->GetValueAsInt()) / unzip};
531 return UnsealPage(sealedPage, element, *fPageAllocator);
543 memset(page.GetBuffer(), 0, page.GetNBytes());
559 memcpy(page.GetBuffer(), sealedPage.
GetBuffer(), bytesPacked);
565 page = std::move(tmp);
583 std::size_t pageSizeLimit)
585 if (fMaxAllocatedBytes - fCurrentAllocatedBytes >= targetAvailableSize)
588 auto itr = fColumnsSortedByPageSize.begin();
589 while (itr != fColumnsSortedByPageSize.end()) {
590 if (itr->fCurrentPageSize <= pageSizeLimit)
592 if (itr->fCurrentPageSize == itr->fInitialPageSize) {
598 auto itrFlush = itr++;
601 if (itr != fColumnsSortedByPageSize.end())
605 if (fMaxAllocatedBytes - fCurrentAllocatedBytes >= targetAvailableSize)
610 itr = fColumnsSortedByPageSize.find(next);
619 auto itr = fColumnsSortedByPageSize.find(key);
620 if (itr == fColumnsSortedByPageSize.end()) {
621 if (!TryEvict(newWritePageSize, 0))
623 fColumnsSortedByPageSize.insert({&column, newWritePageSize, newWritePageSize});
624 fCurrentAllocatedBytes += newWritePageSize;
629 assert(newWritePageSize >= elem.fInitialPageSize);
631 if (newWritePageSize == elem.fCurrentPageSize)
634 fColumnsSortedByPageSize.erase(itr);
636 if (newWritePageSize < elem.fCurrentPageSize) {
638 fCurrentAllocatedBytes -= elem.fCurrentPageSize - newWritePageSize;
639 elem.fCurrentPageSize = newWritePageSize;
640 fColumnsSortedByPageSize.insert(elem);
645 const auto diffBytes = newWritePageSize - elem.fCurrentPageSize;
646 if (!TryEvict(diffBytes, elem.fCurrentPageSize)) {
649 fColumnsSortedByPageSize.insert(elem);
652 fCurrentAllocatedBytes += diffBytes;
653 elem.fCurrentPageSize = newWritePageSize;
654 fColumnsSortedByPageSize.insert(elem);
661 :
RPageStorage(
name), fOptions(options.Clone()), fWritePageMemoryManager(options.GetPageBufferBudget())
671 assert(config.
fPage);
675 unsigned char *pageBuf =
reinterpret_cast<unsigned char *
>(config.
fPage->
GetBuffer());
676 bool isAdoptedBuffer =
true;
678 auto nBytesChecksum = config.
fWriteChecksum * kNBytesPageChecksum;
682 pageBuf =
new unsigned char[nBytesPacked];
683 isAdoptedBuffer =
false;
686 auto nBytesZipped = nBytesPacked;
691 if (!isAdoptedBuffer)
693 pageBuf =
reinterpret_cast<unsigned char *
>(config.
fBuffer);
694 isAdoptedBuffer =
true;
700 sealedPage.ChecksumIfEnabled();
708 const auto nBytes = page.
GetNBytes() + GetWriteOptions().GetEnablePageChecksums() * kNBytesPageChecksum;
709 if (fSealPageBuffer.size() < nBytes)
710 fSealPageBuffer.resize(nBytes);
713 config.
fPage = &page;
716 config.
fWriteChecksum = GetWriteOptions().GetEnablePageChecksums();
718 config.
fBuffer = fSealPageBuffer.data();
720 return SealPage(config);
725 for (
const auto &cb : fOnDatasetCommitCallbacks)
735 const auto nBytes = elementSize * nElements;
736 if (!fWritePageMemoryManager.TryUpdate(*columnHandle.
fColumn, nBytes))
738 return fPageAllocator->NewPage(elementSize, nElements);
743std::unique_ptr<ROOT::Experimental::Internal::RPageSink>
747 if (ntupleName.empty()) {
750 if (location.empty()) {
753 if (location.find(
"daos://") == 0) {
755 return std::make_unique<RPageSinkDaos>(ntupleName, location, options);
762 return std::make_unique<RPageSinkFile>(ntupleName, location, options);
776 auto columnId = fDescriptorBuilder.GetDescriptor().GetNPhysicalColumns();
791 fDescriptorBuilder.AddColumn(columnBuilder.
MakeDescriptor().Unwrap());
798 const auto &descriptor = fDescriptorBuilder.GetDescriptor();
800 if (descriptor.GetNLogicalColumns() > descriptor.GetNPhysicalColumns()) {
803 auto getNColumns = [](
const RFieldBase &
f) -> std::size_t {
804 const auto &reps =
f.GetColumnRepresentatives();
807 return reps.size() * reps[0].size();
809 std::uint32_t nNewPhysicalColumns = 0;
811 nNewPhysicalColumns += getNColumns(*
f);
812 for (
const auto &descendant : *
f)
813 nNewPhysicalColumns += getNColumns(descendant);
815 fDescriptorBuilder.ShiftAliasColumns(nNewPhysicalColumns);
819 auto fieldId = descriptor.GetNFields();
821 fDescriptorBuilder.AddFieldLink(
f.GetParent()->GetOnDiskId(), fieldId);
822 f.SetOnDiskId(fieldId);
826 auto fieldId = descriptor.GetNFields();
829 fDescriptorBuilder.AddFieldLink(
f.GetParent()->GetOnDiskId(), fieldId);
830 fDescriptorBuilder.AddFieldProjection(sourceFieldId, fieldId);
831 f.SetOnDiskId(fieldId);
832 for (
const auto &source : descriptor.GetColumnIterable(sourceFieldId)) {
833 auto targetId = descriptor.GetNLogicalColumns();
839 .ValueRange(source.GetValueRange())
840 .Type(source.GetType())
841 .Index(source.GetIndex())
842 .RepresentationIndex(source.GetRepresentationIndex());
843 fDescriptorBuilder.AddColumn(columnBuilder.
MakeDescriptor().Unwrap());
847 R__ASSERT(firstEntry >= fPrevClusterNEntries);
848 const auto nColumnsBeforeUpdate = descriptor.GetNPhysicalColumns();
851 for (
auto &descendant : *
f)
852 addField(descendant);
855 addProjectedField(*
f);
856 for (
auto &descendant : *
f)
857 addProjectedField(descendant);
860 const auto nColumns = descriptor.GetNPhysicalColumns();
861 for (
DescriptorId_t i = nColumnsBeforeUpdate; i < nColumns; ++i) {
867 columnRange.
fFirstElementIndex = descriptor.GetColumnDescriptor(i).GetFirstElementIndex();
870 fOpenColumnRanges.emplace_back(columnRange);
873 fOpenPageRanges.emplace_back(std::move(pageRange));
878 if (fSerializationContext.GetHeaderSize() > 0)
879 fSerializationContext.MapSchema(descriptor,
true);
886 throw RException(
R__FAIL(
"ROOT bug: unexpected type extra info in UpdateExtraTypeInfo()"));
893 fDescriptorBuilder.SetNTuple(fNTupleName, model.
GetDescription());
894 const auto &descriptor = fDescriptorBuilder.GetDescriptor();
898 fieldZero.SetOnDiskId(0);
900 projectedFields.GetFieldZero().SetOnDiskId(0);
903 for (
auto f : fieldZero.GetSubFields())
904 initialChangeset.fAddedFields.emplace_back(
f);
905 for (
auto f : projectedFields.GetFieldZero().GetSubFields())
906 initialChangeset.fAddedProjectedFields.emplace_back(
f);
907 UpdateSchema(initialChangeset, 0U);
910 auto buffer = MakeUninitArray<unsigned char>(fSerializationContext.GetHeaderSize());
912 InitImpl(buffer.get(), fSerializationContext.GetHeaderSize());
914 fDescriptorBuilder.BeginHeaderExtension();
931 clusterBuilder.
ClusterId(fDescriptorBuilder.GetDescriptor().GetNActiveClusters())
935 for (
unsigned int i = 0; i < fOpenColumnRanges.size(); ++i) {
936 R__ASSERT(fOpenColumnRanges[i].fPhysicalColumnId == i);
937 const auto &columnRange = cluster.GetColumnRange(i);
938 R__ASSERT(columnRange.fPhysicalColumnId == i);
939 const auto &pageRange = cluster.GetPageRange(i);
940 R__ASSERT(pageRange.fPhysicalColumnId == i);
941 clusterBuilder.
CommitColumnRange(i, fOpenColumnRanges[i].fFirstElementIndex, columnRange.fCompressionSettings,
943 fOpenColumnRanges[i].fFirstElementIndex += columnRange.fNElements;
945 fDescriptorBuilder.AddCluster(clusterBuilder.
MoveDescriptor().Unwrap());
946 fPrevClusterNEntries += nEntries;
954 fOpenColumnRanges.at(columnHandle.
fPhysicalId).fIsSuppressed =
true;
963 pageInfo.
fLocator = CommitPageImpl(columnHandle, page);
964 pageInfo.
fHasChecksum = GetWriteOptions().GetEnablePageChecksums();
965 fOpenPageRanges.at(columnHandle.
fPhysicalId).fPageInfos.emplace_back(pageInfo);
971 fOpenColumnRanges.at(physicalColumnId).fNElements += sealedPage.
GetNElements();
975 pageInfo.
fLocator = CommitSealedPageImpl(physicalColumnId, sealedPage);
977 fOpenPageRanges.at(physicalColumnId).fPageInfos.emplace_back(pageInfo);
980std::vector<ROOT::Experimental::RNTupleLocator>
982 std::span<RPageStorage::RSealedPageGroup> ranges,
const std::vector<bool> &
mask)
984 std::vector<ROOT::Experimental::RNTupleLocator> locators;
985 locators.reserve(
mask.size());
987 for (
auto &range : ranges) {
988 for (
auto sealedPageIt = range.fFirst; sealedPageIt != range.fLast; ++sealedPageIt) {
990 locators.push_back(CommitSealedPageImpl(range.fPhysicalColumnId, *sealedPageIt));
993 locators.shrink_to_fit();
998 std::span<RPageStorage::RSealedPageGroup> ranges)
1001 struct RSealedPageLink {
1003 std::size_t fLocatorIdx = 0;
1006 std::vector<bool>
mask;
1008 std::vector<std::size_t> locatorIndexes;
1010 std::unordered_map<std::uint64_t, RSealedPageLink> originalPages;
1011 std::size_t iLocator = 0;
1012 for (
auto &range : ranges) {
1013 const auto rangeSize = std::distance(range.fFirst, range.fLast);
1014 mask.reserve(
mask.size() + rangeSize);
1015 locatorIndexes.reserve(locatorIndexes.size() + rangeSize);
1017 for (
auto sealedPageIt = range.fFirst; sealedPageIt != range.fLast; ++sealedPageIt) {
1018 if (!fFeatures.fCanMergePages || !sealedPageIt->GetHasChecksum()) {
1019 mask.emplace_back(
true);
1020 locatorIndexes.emplace_back(iLocator++);
1024 const auto chk = sealedPageIt->GetChecksum().Unwrap();
1025 auto itr = originalPages.find(chk);
1026 if (itr == originalPages.end()) {
1027 originalPages.insert({chk, {&(*sealedPageIt), iLocator}});
1028 mask.emplace_back(
true);
1029 locatorIndexes.emplace_back(iLocator++);
1033 const auto *
p = itr->second.fSealedPage;
1034 if (sealedPageIt->GetDataSize() !=
p->GetDataSize() ||
1035 memcmp(sealedPageIt->GetBuffer(),
p->GetBuffer(),
p->GetDataSize())) {
1036 mask.emplace_back(
true);
1037 locatorIndexes.emplace_back(iLocator++);
1041 mask.emplace_back(
false);
1042 locatorIndexes.emplace_back(itr->second.fLocatorIdx);
1045 mask.shrink_to_fit();
1046 locatorIndexes.shrink_to_fit();
1049 auto locators = CommitSealedPageVImpl(ranges,
mask);
1052 for (
auto &range : ranges) {
1053 for (
auto sealedPageIt = range.fFirst; sealedPageIt != range.fLast; ++sealedPageIt) {
1054 fOpenColumnRanges.at(range.fPhysicalColumnId).fNElements += sealedPageIt->GetNElements();
1057 pageInfo.
fNElements = sealedPageIt->GetNElements();
1058 pageInfo.
fLocator = locators[locatorIndexes[i++]];
1059 pageInfo.
fHasChecksum = sealedPageIt->GetHasChecksum();
1060 fOpenPageRanges.at(range.fPhysicalColumnId).fPageInfos.emplace_back(pageInfo);
1072 for (
unsigned int i = 0; i < fOpenColumnRanges.size(); ++i) {
1073 RStagedCluster::RColumnInfo columnInfo;
1074 if (fOpenColumnRanges[i].fIsSuppressed) {
1075 assert(fOpenPageRanges[i].fPageInfos.empty());
1076 columnInfo.fPageRange.fPhysicalColumnId = i;
1077 columnInfo.fIsSuppressed =
true;
1079 fOpenColumnRanges[i].fNElements = 0;
1080 fOpenColumnRanges[i].fIsSuppressed =
false;
1082 std::swap(columnInfo.fPageRange, fOpenPageRanges[i]);
1083 fOpenPageRanges[i].fPhysicalColumnId = i;
1085 columnInfo.fNElements = fOpenColumnRanges[i].fNElements;
1086 fOpenColumnRanges[i].fNElements = 0;
1088 stagedCluster.
fColumnInfos.push_back(std::move(columnInfo));
1091 return stagedCluster;
1096 for (
const auto &cluster : clusters) {
1098 clusterBuilder.
ClusterId(fDescriptorBuilder.GetDescriptor().GetNActiveClusters())
1099 .FirstEntryIndex(fPrevClusterNEntries)
1101 for (
const auto &columnInfo : cluster.fColumnInfos) {
1103 if (columnInfo.fIsSuppressed) {
1104 assert(columnInfo.fPageRange.fPageInfos.empty());
1107 clusterBuilder.
CommitColumnRange(colId, fOpenColumnRanges[colId].fFirstElementIndex,
1108 fOpenColumnRanges[colId].fCompressionSettings, columnInfo.fPageRange);
1109 fOpenColumnRanges[colId].fFirstElementIndex += columnInfo.fNElements;
1114 for (
const auto &columnInfo : cluster.fColumnInfos) {
1115 if (!columnInfo.fIsSuppressed)
1121 const auto &columnRangeFromDesc = clusterBuilder.
GetColumnRange(colId);
1123 columnRangeFromDesc.fFirstElementIndex + columnRangeFromDesc.fNElements;
1126 fDescriptorBuilder.AddCluster(clusterBuilder.
MoveDescriptor().Unwrap());
1127 fPrevClusterNEntries += cluster.fNEntries;
1133 const auto &descriptor = fDescriptorBuilder.GetDescriptor();
1135 const auto nClusters = descriptor.GetNActiveClusters();
1136 std::vector<DescriptorId_t> physClusterIDs;
1137 for (
auto i = fNextClusterInGroup; i < nClusters; ++i) {
1138 physClusterIDs.emplace_back(fSerializationContext.MapClusterId(i));
1142 auto bufPageList = MakeUninitArray<unsigned char>(szPageList);
1145 const auto clusterGroupId = descriptor.GetNClusterGroups();
1146 const auto locator = CommitClusterGroupImpl(bufPageList.get(), szPageList);
1149 if (fNextClusterInGroup == nClusters) {
1152 const auto &firstClusterDesc = descriptor.GetClusterDescriptor(fNextClusterInGroup);
1153 const auto &lastClusterDesc = descriptor.GetClusterDescriptor(nClusters - 1);
1154 cgBuilder.
MinEntry(firstClusterDesc.GetFirstEntryIndex())
1155 .
EntrySpan(lastClusterDesc.GetFirstEntryIndex() + lastClusterDesc.GetNEntries() -
1156 firstClusterDesc.GetFirstEntryIndex())
1157 .
NClusters(nClusters - fNextClusterInGroup);
1159 std::vector<DescriptorId_t> clusterIds;
1160 for (
auto i = fNextClusterInGroup; i < nClusters; ++i) {
1161 clusterIds.emplace_back(i);
1164 fDescriptorBuilder.AddClusterGroup(cgBuilder.
MoveDescriptor().Unwrap());
1165 fSerializationContext.MapClusterGroupId(clusterGroupId);
1167 fNextClusterInGroup = nClusters;
1172 if (!fStreamerInfos.empty()) {
1176 fDescriptorBuilder.AddExtraTypeInfo(extraInfoBuilder.
MoveDescriptor().Unwrap());
1179 const auto &descriptor = fDescriptorBuilder.GetDescriptor();
1182 auto bufFooter = MakeUninitArray<unsigned char>(szFooter);
1185 CommitDatasetImpl(bufFooter.get(), szFooter);
1191 fCounters = std::make_unique<RCounters>(
RCounters{
1193 "number of pages committed to storage"),
1195 "volume written for committed pages"),
1200 "CPU time spent writing"),
1202 "CPU time spent compressing")});
#define R__FORWARD_ERROR(res)
Short-hand to return an RResult<T> in an error state (i.e. after checking)
#define R__FAIL(msg)
Short-hand to return an RResult<T> in an error state; the RError is implicitly converted into RResult...
#define R__ASSERT(e)
Checks condition e and reports a fatal error if it's false.
winID h TVirtualViewer3D TVirtualGLPainter p
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t mask
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t result
A thread-safe integral performance counter.
A metric element that computes its floating point value from other counters.
std::int64_t GetValueAsInt() const override
A collection of Counter objects with a name, a unit, and a description.
const RNTuplePerfCounter * GetLocalCounter(std::string_view name) const
Searches counters registered in this object only. Returns nullptr if name is not found.
An either thread-safe or non thread safe counter for CPU ticks.
Record wall time and CPU time between construction and destruction.
A helper class for piece-wise construction of an RClusterDescriptor.
RResult< RClusterDescriptor > MoveDescriptor()
Move out the full cluster descriptor including page locations.
RClusterDescriptorBuilder & ClusterId(DescriptorId_t clusterId)
RClusterDescriptorBuilder & NEntries(std::uint64_t nEntries)
RClusterDescriptorBuilder & FirstEntryIndex(std::uint64_t firstEntryIndex)
const RClusterDescriptor::RColumnRange & GetColumnRange(DescriptorId_t physicalId)
RResult< void > MarkSuppressedColumnRange(DescriptorId_t physicalId)
Books the given column ID as being suppressed in this cluster.
RResult< void > CommitColumnRange(DescriptorId_t physicalId, std::uint64_t firstElementIndex, std::uint32_t compressionSettings, const RClusterDescriptor::RPageRange &pageRange)
RResult< void > CommitSuppressedColumnRanges(const RNTupleDescriptor &desc)
Sets the first element index and number of elements for all the suppressed column ranges.
A helper class for piece-wise construction of an RClusterGroupDescriptor.
RClusterGroupDescriptorBuilder & PageListLocator(const RNTupleLocator &pageListLocator)
void AddClusters(const std::vector< DescriptorId_t > &clusterIds)
RClusterGroupDescriptorBuilder & MinEntry(std::uint64_t minEntry)
RClusterGroupDescriptorBuilder & ClusterGroupId(DescriptorId_t clusterGroupId)
RClusterGroupDescriptorBuilder & EntrySpan(std::uint64_t entrySpan)
RClusterGroupDescriptorBuilder & NClusters(std::uint32_t nClusters)
RClusterGroupDescriptorBuilder & PageListLength(std::uint64_t pageListLength)
RResult< RClusterGroupDescriptor > MoveDescriptor()
An in-memory subset of the packed and compressed pages of a cluster.
const ColumnSet_t & GetAvailPhysicalColumns() const
const ROnDiskPage * GetOnDiskPage(const ROnDiskPage::Key &key) const
DescriptorId_t GetId() const
std::unordered_set< DescriptorId_t > ColumnSet_t
A helper class for piece-wise construction of an RColumnDescriptor.
RColumnDescriptorBuilder & PhysicalColumnId(DescriptorId_t physicalColumnId)
RColumnDescriptorBuilder & Type(EColumnType type)
RColumnDescriptorBuilder & SetSuppressedDeferred()
RColumnDescriptorBuilder & BitsOnStorage(std::uint16_t bitsOnStorage)
RColumnDescriptorBuilder & RepresentationIndex(std::uint16_t representationIndex)
RColumnDescriptorBuilder & FieldId(DescriptorId_t fieldId)
RColumnDescriptorBuilder & Index(std::uint32_t index)
RColumnDescriptorBuilder & FirstElementIndex(std::uint64_t firstElementIdx)
RResult< RColumnDescriptor > MakeDescriptor() const
Attempt to make a column descriptor.
RColumnDescriptorBuilder & LogicalColumnId(DescriptorId_t logicalColumnId)
RColumnDescriptorBuilder & ValueRange(double min, double max)
A column element encapsulates the translation between basic C++ types and their column representation...
virtual RIdentifier GetIdentifier() const =0
std::size_t GetSize() const
virtual bool IsMappable() const
Derived, typed classes tell whether the on-storage layout is bitwise identical to the memory layout.
virtual void Pack(void *destination, const void *source, std::size_t count) const
If the on-storage layout and the in-memory layout differ, packing creates an on-disk page from an in-...
virtual void Unpack(void *destination, const void *source, std::size_t count) const
If the on-storage layout and the in-memory layout differ, unpacking creates a memory page from an on-...
std::size_t GetPackedSize(std::size_t nElements=1U) const
A column is a storage-backed array of a simple, fixed-size type, from which pages can be mapped into ...
RColumnElementBase * GetElement() const
DescriptorId_t GetOnDiskId() const
std::optional< std::pair< double, double > > GetValueRange() const
std::uint16_t GetRepresentationIndex() const
EColumnType GetType() const
std::uint32_t GetIndex() const
std::size_t GetWritePageCapacity() const
NTupleSize_t GetFirstElementIndex() const
std::uint16_t GetBitsOnStorage() const
static RFieldDescriptorBuilder FromField(const RFieldBase &field)
Make a new RFieldDescriptorBuilder based off a live NTuple field.
RResult< RFieldDescriptor > MakeDescriptor() const
Attempt to make a field descriptor.
RFieldDescriptorBuilder & FieldId(DescriptorId_t fieldId)
size_t Zip(const void *from, size_t nbytes, int compression, Writer_t fnWriter)
Returns the size of the compressed data.
static void Unzip(const void *from, size_t nbytes, size_t dataLen, void *to)
The nbytes parameter provides the size ls of the from buffer.
static std::uint32_t SerializeXxHash3(const unsigned char *data, std::uint64_t length, std::uint64_t &xxhash3, void *buffer)
Writes a XxHash-3 64bit checksum of the byte range given by data and length.
static RContext SerializeHeader(void *buffer, const RNTupleDescriptor &desc)
static std::string SerializeStreamerInfos(const StreamerInfoMap_t &infos)
static std::uint32_t SerializePageList(void *buffer, const RNTupleDescriptor &desc, std::span< DescriptorId_t > physClusterIDs, const RContext &context)
static RResult< StreamerInfoMap_t > DeserializeStreamerInfos(const std::string &extraTypeInfoContent)
static RResult< void > VerifyXxHash3(const unsigned char *data, std::uint64_t length, std::uint64_t &xxhash3)
Expects an xxhash3 checksum in the 8 bytes following data + length and verifies it.
static std::uint32_t DeserializeUInt64(const void *buffer, std::uint64_t &val)
static std::uint32_t SerializeFooter(void *buffer, const RNTupleDescriptor &desc, const RContext &context)
A memory region that contains packed and compressed pages.
void Register(const ROnDiskPage::Key &key, const ROnDiskPage &onDiskPage)
Inserts information about a page stored in fMemory.
A page as being stored on disk, that is packed and compressed.
Uses standard C++ memory allocation for the column data pages.
Abstract interface to allocate and release pages.
virtual RPage NewPage(std::size_t elementSize, std::size_t nElements)=0
Reserves memory large enough to hold nElements of the given size.
ColumnHandle_t AddColumn(DescriptorId_t fieldId, RColumn &column) final
Register a new column.
RStagedCluster StageCluster(NTupleSize_t nNewEntries) final
Stage the current cluster and create a new one for the following data.
virtual void InitImpl(unsigned char *serializedHeader, std::uint32_t length)=0
~RPagePersistentSink() override
virtual std::vector< RNTupleLocator > CommitSealedPageVImpl(std::span< RPageStorage::RSealedPageGroup > ranges, const std::vector< bool > &mask)
Vector commit of preprocessed pages.
void InitFromDescriptor(const RNTupleDescriptor &descriptor)
Initialize sink based on an existing descriptor and fill into the descriptor builder.
void CommitPage(ColumnHandle_t columnHandle, const RPage &page) final
Write a page to the storage. The column must have been added before.
static std::unique_ptr< RPageSink > Create(std::string_view ntupleName, std::string_view location, const RNTupleWriteOptions &options=RNTupleWriteOptions())
Guess the concrete derived page source from the location.
RPagePersistentSink(std::string_view ntupleName, const RNTupleWriteOptions &options)
void CommitClusterGroup() final
Write out the page locations (page list envelope) for all the committed clusters since the last call ...
void UpdateSchema(const RNTupleModelChangeset &changeset, NTupleSize_t firstEntry) final
Incorporate incremental changes to the model into the ntuple descriptor.
void CommitSealedPage(DescriptorId_t physicalColumnId, const RPageStorage::RSealedPage &sealedPage) final
Write a preprocessed page to storage. The column must have been added before.
void CommitSealedPageV(std::span< RPageStorage::RSealedPageGroup > ranges) final
Write a vector of preprocessed pages to storage. The corresponding columns must have been added befor...
void CommitSuppressedColumn(ColumnHandle_t columnHandle) final
Commits a suppressed column for the current cluster.
void CommitStagedClusters(std::span< RStagedCluster > clusters) final
Commit staged clusters, logically appending them to the ntuple descriptor.
void EnableDefaultMetrics(const std::string &prefix)
Enables the default set of metrics provided by RPageSink.
void UpdateExtraTypeInfo(const RExtraTypeInfoDescriptor &extraTypeInfo) final
Adds an extra type information record to schema.
void CommitDatasetImpl() final
Abstract interface to write data into an ntuple.
RPageSink(std::string_view ntupleName, const RNTupleWriteOptions &options)
void CommitDataset()
Run the registered callbacks and finalize the current cluster and the entrire data set.
virtual RPage ReservePage(ColumnHandle_t columnHandle, std::size_t nElements)
Get a new, empty page for the given column that can be filled with up to nElements; nElements must be...
RSealedPage SealPage(const RPage &page, const RColumnElementBase &element)
Helper for streaming a page.
RCluster::ColumnSet_t ToColumnSet() const
void Insert(DescriptorId_t physicalColumnId, RColumnElementBase::RIdentifier elementId)
void Erase(DescriptorId_t physicalColumnId, RColumnElementBase::RIdentifier elementId)
ColumnHandle_t AddColumn(DescriptorId_t fieldId, RColumn &column) override
Register a new column.
void LoadStructure()
Loads header and footer without decompressing or deserializing them.
RPageSource(std::string_view ntupleName, const RNTupleReadOptions &fOptions)
void PrepareLoadCluster(const RCluster::RKey &clusterKey, ROnDiskPageMap &pageZeroMap, std::function< void(DescriptorId_t, NTupleSize_t, const RClusterDescriptor::RPageRange::RPageInfo &)> perPageFunc)
Prepare a page range read for the column set in clusterKey.
std::unique_ptr< RPageSource > Clone() const
Open the same storage multiple time, e.g.
void EnableDefaultMetrics(const std::string &prefix)
Enables the default set of metrics provided by RPageSource.
void DropColumn(ColumnHandle_t columnHandle) override
Unregisters a column.
static std::unique_ptr< RPageSource > Create(std::string_view ntupleName, std::string_view location, const RNTupleReadOptions &options=RNTupleReadOptions())
Guess the concrete derived page source from the file name (location)
NTupleSize_t GetNElements(ColumnHandle_t columnHandle)
void UnzipCluster(RCluster *cluster)
Parallel decompression and unpacking of the pages in the given cluster.
static RResult< RPage > UnsealPage(const RSealedPage &sealedPage, const RColumnElementBase &element, RPageAllocator &pageAlloc)
Helper for unstreaming a page.
virtual RPageRef LoadPage(ColumnHandle_t columnHandle, NTupleSize_t globalIndex)
Allocates and fills a page that contains the index-th element.
void SetEntryRange(const REntryRange &range)
Promise to only read from the given entry range.
virtual void UnzipClusterImpl(RCluster *cluster)
void Attach()
Open the physical storage container and deserialize header and footer.
void UpdateLastUsedCluster(DescriptorId_t clusterId)
Does nothing if fLastUsedCluster == clusterId.
NTupleSize_t GetNEntries()
Common functionality of an ntuple storage for both reading and writing.
RPageStorage(std::string_view name)
Stores information about the cluster in which this page resides.
A page is a slice of a column that is mapped into memory.
void * GrowUnchecked(ClusterSize_t::ValueType nElements)
Increases the number elements in the page.
std::size_t GetNBytes() const
The space taken by column elements in the buffer.
std::uint32_t GetNElements() const
static const void * GetPageZeroBuffer()
Return a pointer to the page zero buffer used if there is no on-disk data for a particular deferred c...
const RFieldBase * GetSourceField(const RFieldBase *target) const
bool TryUpdate(RColumn &column, std::size_t newWritePageSize)
Try to register the new write page size for the given column.
bool TryEvict(std::size_t targetAvailableSize, std::size_t pageSizeLimit)
Flush columns in order of allocated write page size until the sum of all write page allocations leave...
Meta-data for a set of ntuple clusters.
NTupleSize_t GetFirstEntryIndex() const
ClusterSize_t GetNEntries() const
Addresses a column element or field item relative to a particular cluster, instead of a global NTuple...
DescriptorId_t GetClusterId() const
ClusterSize_t::ValueType GetIndex() const
Base class for all ROOT issued exceptions.
A field translates read and write calls from/to underlying columns to/from tree values.
DescriptorId_t GetOnDiskId() const
The on-storage meta-data of an ntuple.
std::unique_ptr< RNTupleModel > CreateModel(const RCreateModelOptions &options=RCreateModelOptions()) const
Re-create the C++ model from the stored meta-data.
DescriptorId_t FindNextClusterId(DescriptorId_t clusterId) const
DescriptorId_t FindClusterId(DescriptorId_t physicalColumnId, NTupleSize_t index) const
const RClusterDescriptor & GetClusterDescriptor(DescriptorId_t clusterId) const
The RNTupleModel encapulates the schema of an ntuple.
const std::string & GetDescription() const
Common user-tunable settings for reading ntuples.
Common user-tunable settings for storing ntuples.
void ThrowOnError()
Short-hand method to throw an exception in the case of errors.
The class is used as a return type for operations that can fail; wraps a value of type T or an RError...
std::unique_ptr< RColumnElementBase > GenerateColumnElement(std::type_index inMemoryType, EColumnType onDiskType)
RProjectedFields & GetProjectedFieldsOfModel(RNTupleModel &model)
RResult< void > EnsureValidNameForRNTuple(std::string_view name, std::string_view where)
Check whether a given string is a valid name according to the RNTuple specification.
void CallConnectPageSinkOnField(RFieldBase &, RPageSink &, NTupleSize_t firstEntry=0)
RFieldZero & GetFieldZeroOfModel(RNTupleModel &model)
std::uint64_t NTupleSize_t
Integer type long enough to hold the maximum number of entries in a column.
std::uint64_t DescriptorId_t
Distriniguishes elements of the same type within a descriptor, e.g. different fields.
constexpr NTupleSize_t kInvalidNTupleIndex
constexpr DescriptorId_t kInvalidDescriptorId
The identifiers that specifies the content of a (partial) cluster.
DescriptorId_t fClusterId
ColumnSet_t fPhysicalColumnSet
Every concrete RColumnElement type is identified by its on-disk type (column type) and the in-memory ...
The incremental changes to a RNTupleModel
std::vector< RFieldBase * > fAddedProjectedFields
Points to the projected fields in fModel that were added as part of an updater transaction.
std::vector< RFieldBase * > fAddedFields
Points to the fields in fModel that were added as part of an updater transaction.
On-disk pages within a page source are identified by the column and page number.
Default I/O performance counters that get registered in fMetrics.
std::type_index fInMemoryType
Parameters for the SealPage() method.
const RColumnElementBase * fElement
Corresponds to the page's elements, for size calculation etc.
void * fBuffer
Location for sealed output. The memory buffer has to be large enough.
bool fAllowAlias
If false, the output buffer must not point to the input page buffer, which would otherwise be an opti...
int fCompressionSetting
Compression algorithm and level to apply.
bool fWriteChecksum
Adds a 8 byte little-endian xxhash3 checksum to the page payload.
const RPage * fPage
Input page to be sealed.
Cluster that was staged, but not yet logically appended to the RNTuple.
std::uint64_t fNBytesWritten
std::vector< RColumnInfo > fColumnInfos
Summarizes cluster-level information that are necessary to load a certain page.
DescriptorId_t fClusterId
std::uint64_t fColumnOffset
The first element number of the page's column in the given cluster.
RClusterDescriptor::RPageRange::RPageInfoExtended fPageInfo
Location of the page on disk.
Default I/O performance counters that get registered in fMetrics
Used in SetEntryRange / GetEntryRange.
bool IntersectsWith(const RClusterDescriptor &clusterDesc) const
Returns true if the given cluster has entries within the entry range.
DescriptorId_t fPhysicalId
A sealed page contains the bytes of a page as written to storage (packed & compressed).
const void * GetBuffer() const
void SetHasChecksum(bool hasChecksum)
void SetNElements(std::uint32_t nElements)
void SetBuffer(const void *buffer)
void SetBufferSize(std::size_t bufferSize)
RResult< void > VerifyChecksumIfEnabled() const
RResult< std::uint64_t > GetChecksum() const
Returns a failure if the sealed page has no checksum.
std::uint32_t GetNElements() const
std::size_t GetBufferSize() const
bool GetHasChecksum() const
std::size_t GetDataSize() const
std::size_t fCurrentPageSize
bool operator>(const RColumnInfo &other) const
The window of element indexes of a particular column in a particular cluster.
NTupleSize_t fFirstElementIndex
The global index of the first column element in the cluster.
int fCompressionSettings
The usual format for ROOT compression settings (see Compression.h).
ClusterSize_t fNElements
The number of column elements in the cluster.
DescriptorId_t fPhysicalColumnId
ELocatorType fType
For non-disk locators, the value for the Type field.