distrdf002_dask_connection.py File Reference

Detailed Description

Configure a Dask connection and fill two histograms distributedly.

This tutorial shows the ingredients needed to setup the connection to a Dask cluster (e.g. a LocalCluster for a single machine). After this initial setup, an RDataFrame with distributed capabilities is created and connected to a Dask Client instance. Finally, a couple of histograms are drawn from the created columns in the dataset. Relevant documentation can be found at http://distributed.dask.org/en/stable .

from dask.distributed import LocalCluster, Client
import ROOT
 
 
def create_connection():
    """
    Setup connection to a Dask cluster. Two ingredients are needed:
    1. Creating a cluster object that represents computing resources. This can be
       done in various ways depending on the type of resources at disposal. To use
       only the local machine (e.g. your laptop), a `LocalCluster` object can be
       used. This step can be skipped if you have access to an existing Dask
       cluster; in that case, the cluster administrator should provide you with a
       URL to connect to the cluster in step 2. More options for cluster creation
       can be found in the Dask docs at
       http://distributed.dask.org/en/stable/api.html#cluster .
    2. Creating a Dask client object that connects to the cluster. This accepts
       directly the object previously created. In case the cluster was setup
       externally, you need to provide an endpoint URL to the client, e.g.
       'https://myscheduler.domain:8786'.
 
    Through Dask, you can connect to various types of cluster resources. For
    example, you can connect together a set of machines through SSH and use them
    to run your computations. This is done through the `SSHCluster` class. For
    example:
 
    ```python
    from dask.distributed import SSHCluster
    cluster = SSHCluster(
        # A list with machine host names, the first name will be used as
        # scheduler, following names will become workers.
        hosts=["machine1","machine2","machine3"],
        # A dictionary of options for each worker node, here we set the number
        # of cores to be used on each node.
        worker_options={"nprocs":4,},
    )
    ```
 
    Another common usecase is interfacing Dask to a batch system like HTCondor or
    Slurm. A separate package called dask-jobqueue (https://jobqueue.dask.org)
    extends the available Dask cluster classes to enable running Dask computations
    as batch jobs. In this case, the cluster object usually receives the parameters
    that would be written in the job description file. For example:
 
    ```python
    from dask_jobqueue import HTCondorCluster
    cluster = HTCondorCluster(
        cores=1,
        memory='2000MB',
        disk='1000MB',
    )
    # Use the scale method to send as many jobs as needed
    cluster.scale(4)
    ```
 
    In this tutorial, a cluster object is created for the local machine, using
    multiprocessing (processes=True) on 2 workers (n_workers=2) each using only
    1 core (threads_per_worker=1) and 2GiB of RAM (memory_limit="2GiB").
    """
    cluster = LocalCluster(n_workers=2, threads_per_worker=1, processes=True, memory_limit="2GiB")
    client = Client(cluster)
    return client
 
 
# This tutorial uses Python multiprocessing, so the creation of the cluster
# needs to be wrapped in the main clause as described in the Python docs
# https://docs.python.org/3/library/multiprocessing.html
if __name__ == "__main__":
 
    # Create the connection to the mock Dask cluster on the local machine
    connection = create_connection()
    # Create an RDataFrame that will use Dask as a backend for computations
    df = ROOT.RDataFrame(1000, executor=connection)
 
    # Set the random seed and define two columns of the dataset with random numbers.
    ROOT.gRandom.SetSeed(1)
    df_1 = df.Define("gaus", "gRandom->Gaus(10, 1)").Define("exponential", "gRandom->Exp(10)")
 
    # Book an histogram for each column
    h_gaus = df_1.Histo1D(("gaus", "Normal distribution", 50, 0, 30), "gaus")
    h_exp = df_1.Histo1D(("exponential", "Exponential distribution", 50, 0, 30), "exponential")
 
    # Plot the histograms side by side on a canvas
    c = ROOT.TCanvas("distrdf002", "distrdf002", 800, 400)
    c.Divide(2, 1)
    c.cd(1)
    h_gaus.DrawCopy()
    c.cd(2)
    h_exp.DrawCopy()
 
    # Save the canvas
    c.SaveAs("distrdf002_dask_connection.png")
    print("Saved figure to distrdf002_dask_connection.png")

Date

February 2022

Author

Vincenzo Eduardo Padulano

Definition in file distrdf002_dask_connection.py.