RegressionKeras.py File Reference

Detailed Description

This tutorial shows how to do regression in TMVA with neural networks trained with keras.

 
from ROOT import TMVA, TFile, TCut, gROOT
from subprocess import call
from os.path import isfile
 
from tensorflow.keras.models import Sequential
from tensorflow.keras.layers import Dense
from tensorflow.keras.optimizers import SGD
 
 
def create_model():
    # Define model
    model = Sequential()
    model.add(Dense(64, activation='tanh', input_dim=2))
    model.add(Dense(1, activation='linear'))
 
    # Set loss and optimizer
    model.compile(loss='mean_squared_error', optimizer=SGD(
        learning_rate=0.01), weighted_metrics=[])
 
    # Store model to file
    model.save('modelRegression.h5')
    model.summary()
 
 
def run():
 
    with TFile.Open('TMVA_Regression_Keras.root', 'RECREATE') as output, TFile.Open(str(gROOT.GetTutorialDir()) + '/machine_learning/data/tmva_reg_example.root') as data:
        factory = TMVA.Factory('TMVARegression', output,
                               '!V:!Silent:Color:DrawProgressBar:Transformations=D,G:AnalysisType=Regression')
 
        tree = data.Get('TreeR')
 
        dataloader = TMVA.DataLoader('dataset')
        for branch in tree.GetListOfBranches():
            name = branch.GetName()
            if name != 'fvalue':
                dataloader.AddVariable(name)
        dataloader.AddTarget('fvalue')
 
        dataloader.AddRegressionTree(tree, 1.0)
        # use only 1000 events since evaluation is very slow (especially on MacOS). Increase it to get meaningful results
        dataloader.PrepareTrainingAndTestTree(TCut(''),
                                              'nTrain_Regression=1000:SplitMode=Random:NormMode=NumEvents:!V')
 
        # Book methods
        factory.BookMethod(dataloader, TMVA.Types.kPyKeras, 'PyKeras',
                           'H:!V:VarTransform=D,G:FilenameModel=modelRegression.h5:FilenameTrainedModel=trainedModelRegression.h5:NumEpochs=20:BatchSize=32')
        factory.BookMethod(dataloader, TMVA.Types.kBDT, 'BDTG',
                           '!H:!V:VarTransform=D,G:NTrees=1000:BoostType=Grad:Shrinkage=0.1:UseBaggedBoost:BaggedSampleFraction=0.5:nCuts=20:MaxDepth=4')
 
        # Run TMVA
        factory.TrainAllMethods()
        factory.TestAllMethods()
        factory.EvaluateAllMethods()
 
 
if __name__ == "__main__":
    # Setup TMVA
    TMVA.Tools.Instance()
    TMVA.PyMethodBase.PyInitialize()
 
    # Generate model
    create_model()
 
    # Run TMVA
    run()

Date

2017

Author

TMVA Team

Definition in file RegressionKeras.py.