ApplicationClassificationPyTorch.py File Reference

Detailed Description

This tutorial shows how to apply a trained model to new data.

 
 
# PyTorch has to be imported before ROOT to avoid crashes because of clashing
# std::regexp symbols that are exported by cppyy.
# See also: https://github.com/wlav/cppyy/issues/227
import torch
 
from ROOT import TMVA, TFile, TString, gROOT
from array import array
from subprocess import call
from os.path import isfile
 
 
# Setup TMVA
TMVA.Tools.Instance()
TMVA.PyMethodBase.PyInitialize()
reader = TMVA.Reader("Color:!Silent")
 
 
# Load data
fname = str(gROOT.GetTutorialDir()) + "/machine_learning/data/tmva_class_example.root"
data = TFile.Open(fname)
signal = data.Get('TreeS')
background = data.Get('TreeB')
 
branches = {}
for branch in signal.GetListOfBranches():
    branchName = branch.GetName()
    branches[branchName] = array('f', [-999])
    reader.AddVariable(branchName, branches[branchName])
    signal.SetBranchAddress(branchName, branches[branchName])
    background.SetBranchAddress(branchName, branches[branchName])
 
 
# Define predict function
def predict(model, test_X, batch_size=32):
    # Set to eval mode
    model.eval()
 
    test_dataset = torch.utils.data.TensorDataset(torch.Tensor(test_X))
    test_loader = torch.utils.data.DataLoader(test_dataset, batch_size=batch_size, shuffle=False)
 
    predictions = []
    with torch.no_grad():
        for i, data in enumerate(test_loader):
            X = data[0]
            outputs = model(X)
            predictions.append(outputs)
        preds = torch.cat(predictions)
 
    return preds.numpy()
 
 
load_model_custom_objects = {"optimizer": None, "criterion": None, "train_func": None, "predict_func": predict}
 
 
# Book methods
reader.BookMVA('PyTorch', TString('dataset/weights/TMVAClassification_PyTorch.weights.xml'))
 
 
# Print some example classifications
print('Some signal example classifications:')
for i in range(20):
    signal.GetEntry(i)
    print(reader.EvaluateMVA('PyTorch'))
print('')
 
print('Some background example classifications:')
for i in range(20):
    background.GetEntry(i)
    print(reader.EvaluateMVA('PyTorch'))

Date

2020

Author

Anirudh Dagar aniru.nosp@m.dhda.nosp@m.gar6@.nosp@m.gmai.nosp@m.l.com - IIT, Roorkee

Definition in file ApplicationClassificationPyTorch.py.