ClassificationKeras.py

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#!/usr/bin/env python
## \file
## \ingroup tutorial_tmva_keras
## \notebook -nodraw
## This tutorial shows how to do classification in TMVA with neural networks
## trained with keras.
##
## \macro_code
##
## \date 2017
## \author TMVA Team
 
from ROOT import TMVA, TFile, TTree, TCut, gROOT
from subprocess import call
from os.path import isfile
 
from tensorflow.keras.models import Sequential
from tensorflow.keras.layers import Dense, Activation
from tensorflow.keras.optimizers import SGD
 
# Setup TMVA
TMVA.Tools.Instance()
TMVA.PyMethodBase.PyInitialize()
 
output = TFile.Open('TMVA_Classification_Keras.root', 'RECREATE')
factory = TMVA.Factory('TMVAClassification', output,
                       '!V:!Silent:Color:DrawProgressBar:Transformations=D,G:AnalysisType=Classification')
 
# Load data
data = TFile.Open(str(gROOT.GetTutorialDir()) + '/tmva/data/tmva_class_example.root')
signal = data.Get('TreeS')
background = data.Get('TreeB')
 
dataloader = TMVA.DataLoader('dataset')
for branch in signal.GetListOfBranches():
    dataloader.AddVariable(branch.GetName())
 
dataloader.AddSignalTree(signal, 1.0)
dataloader.AddBackgroundTree(background, 1.0)
dataloader.PrepareTrainingAndTestTree(TCut(''),
                                      'nTrain_Signal=4000:nTrain_Background=4000:SplitMode=Random:NormMode=NumEvents:!V')
 
# Generate model
 
# Define model
model = Sequential()
model.add(Dense(64, activation='relu', input_dim=4))
model.add(Dense(2, activation='softmax'))
 
# Set loss and optimizer
model.compile(loss='categorical_crossentropy',
              optimizer=SGD(learning_rate=0.01), weighted_metrics=['accuracy', ])
 
# Store model to file
model.save('modelClassification.h5')
model.summary()
 
# Book methods
factory.BookMethod(dataloader, TMVA.Types.kFisher, 'Fisher',
                   '!H:!V:Fisher:VarTransform=D,G')
factory.BookMethod(dataloader, TMVA.Types.kPyKeras, 'PyKeras',
                   'H:!V:VarTransform=D,G:FilenameModel=modelClassification.h5:FilenameTrainedModel=trainedModelClassification.h5:NumEpochs=20:BatchSize=32')
 
# Run training, test and evaluation
factory.TrainAllMethods()
factory.TestAllMethods()
factory.EvaluateAllMethods()