Forest.hxx

Go to the documentation of this file.

/**********************************************************************************
 * Project: ROOT - a Root-integrated toolkit for multivariate data analysis       *
 * Package: TMVA                                                                  *
 * Web    : http://tmva.sourceforge.net                                           *
 *                                                                                *
 * Description:                                                                   *
 *                                                                                *
 * Authors:                                                                       *
 *      Stefan Wunsch (stefan.wunsch@cern.ch)                                     *
 *      Luca Zampieri (luca.zampieri@alumni.epfl.ch)                              *
 *                                                                                *
 * Copyright (c) 2019:                                                            *
 *      CERN, Switzerland                                                         *
 *                                                                                *
 * Redistribution and use in source and binary forms, with or without             *
 * modification, are permitted according to the terms listed in LICENSE           *
 * (http://tmva.sourceforge.net/LICENSE)                                          *
 **********************************************************************************/
 
#ifndef TMVA_TREEINFERENCE_FOREST
#define TMVA_TREEINFERENCE_FOREST
 
#include <functional>
#include <string>
#include <vector>
#include <stdexcept>
#include <cmath>
#include <algorithm>
 
#include "TFile.h"
#include "TDirectory.h"
#include "TInterpreter.h"
#include "TUUID.h"
#include "TGenericClassInfo.h" // ROOT::Internal::GetDemangledTypeName
 
#include "BranchlessTree.hxx"
#include "Objectives.hxx"
 
namespace TMVA {
namespace Experimental {
 
namespace Internal {
template <typename T>
T *GetObjectSafe(TFile *f, const std::string &n, const std::string &m)
{
   auto v = reinterpret_cast<T *>(f->Get(m.c_str()));
   if (v == nullptr)
      throw std::runtime_error("Failed to read " + m + " from file " + n + ".");
   return v;
}
 
template <typename T>
bool CompareTree(const BranchlessTree<T> &a, const BranchlessTree<T> &b)
{
   if (a.fInputs[0] == b.fInputs[0])
      return a.fThresholds[0] < b.fThresholds[0];
   else
      return a.fInputs[0] < b.fInputs[0];
}
} // namespace Internal
 
/// Forest base class
///
/// \tparam T Value type for the computation (usually floating point type)
/// \tparam ForestType Type of the collection of trees
template <typename T, typename ForestType>
struct ForestBase {
   using Value_t = T;
   std::function<T(T)> fObjectiveFunc; ///< Objective function
   ForestType fTrees;                  ///< Store the forest, either as vector or jitted function
   int fNumInputs;                     ///< Number of input variables
 
   void Inference(const T *inputs, const int rows, bool layout, T *predictions);
};
 
/// Perform inference of the forest on a batch of inputs
///
/// \param[in] inputs Pointer to data containing the inputs
/// \param[in] rows Number of events in inputs vector
/// \param[in] layout Row major (true) or column major (false) memory layout
/// \param[in] predictions Pointer to the buffer to be filled with the predictions
template <typename T, typename ForestType>
inline void ForestBase<T, ForestType>::Inference(const T *inputs, const int rows, bool layout, T *predictions)
{
   const auto strideTree = layout ? 1 : rows;
   const auto strideBatch = layout ? fNumInputs : 1;
   for (int i = 0; i < rows; i++) {
      predictions[i] = 0.0;
      for (auto &tree : fTrees) {
         predictions[i] += tree.Inference(inputs + i * strideBatch, strideTree);
      }
      predictions[i] = fObjectiveFunc(predictions[i]);
   }
}
 
/// Forest using branchless trees
///
/// \tparam T Value type for the computation (usually floating point type)
template <typename T>
struct BranchlessForest : public ForestBase<T, std::vector<BranchlessTree<T>>> {
   void Load(const std::string &key, const std::string &filename, const int output = 0, const bool sortTrees = true);
};
 
/// Load parameters from a ROOT file to the branchless trees
///
/// \param[in] key Name of folder in the ROOT file containing the model parameters
/// \param[in] filename Filename of the ROOT file
/// \param[in] output Load trees corresponding to the given output node of the forest
/// \param[in] sortTrees Flag to indicate sorting the input trees by the cut value of the first node of each tree
template <typename T>
inline void
BranchlessForest<T>::Load(const std::string &key, const std::string &filename, const int output, const bool sortTrees)
{
   // Open input file and get folder from key
   auto file = TFile::Open(filename.c_str(), "READ");
 
   // Load parameters from file
   auto maxDepth = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/max_depth");
   auto numTrees = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/num_trees");
   auto numInputs = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/num_inputs");
   auto numOutputs = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/num_outputs");
   auto objective = Internal::GetObjectSafe<std::string>(file, filename, key + "/objective");
   auto inputs = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/inputs");
   auto outputs = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/outputs");
   auto thresholds = Internal::GetObjectSafe<std::vector<T>>(file, filename, key + "/thresholds");
 
   this->fNumInputs = numInputs->at(0);
   this->fObjectiveFunc = Objectives::GetFunction<T>(*objective);
   const auto lenInputs = std::pow(2, maxDepth->at(0)) - 1;
   const auto lenThresholds = std::pow(2, maxDepth->at(0) + 1) - 1;
 
   // Find number of trees corresponding to given output node
   if (output > numOutputs->at(0))
      throw std::runtime_error("Given output node of the forest is larger or equal to number of output nodes.");
   int c = 0;
   for (int i = 0; i < numTrees->at(0); i++)
      if (outputs->at(i) == output)
         c++;
   if (c == 0)
      std::runtime_error("No trees found for given output node of the forest.");
   this->fTrees.resize(c);
 
   // Load parameters in trees
   c = 0;
   for (int i = 0; i < numTrees->at(0); i++) {
      // Select only trees for the given output node of the forest
      if (outputs->at(i) != output)
         continue;
 
      // Set tree depth
      this->fTrees[c].fTreeDepth = maxDepth->at(0);
 
      // Set feature indices
      this->fTrees[c].fInputs.resize(lenInputs);
      for (int j = 0; j < lenInputs; j++)
         this->fTrees[c].fInputs[j] = inputs->at(i * lenInputs + j);
 
      // Set threshold values
      this->fTrees[c].fThresholds.resize(lenThresholds);
      for (int j = 0; j < lenThresholds; j++)
         this->fTrees[c].fThresholds[j] = thresholds->at(i * lenThresholds + j);
 
      // Fill sparse trees fully
      this->fTrees[c].FillSparse();
 
      c++;
   }
 
   // Sort trees by first cut variable and threshold value
   if (sortTrees)
      std::sort(this->fTrees.begin(), this->fTrees.end(), Internal::CompareTree<T>);
 
   // Clean-up
   delete maxDepth;
   delete numTrees;
   delete numInputs;
   delete objective;
   delete inputs;
   delete thresholds;
   file->Close();
}
 
/// Forest using branchless jitted trees
///
/// \tparam T Value type for the computation (usually floating point type)
template <typename T>
struct BranchlessJittedForest : public ForestBase<T, std::function<void (const T *, const int, bool, T*)>> {
    std::string Load(const std::string &key, const std::string &filename, const int output = 0, const bool sortTrees = true);
   void Inference(const T *inputs, const int rows, bool layout, T *predictions);
};
 
/// Load parameters from a ROOT file to the branchless trees
///
/// \param[in] key Name of folder in the ROOT file containing the model parameters
/// \param[in] filename Filename of the ROOT file
/// \param[in] output Load trees corresponding to the given output node of the forest
/// \param[in] sortTrees Flag to indicate sorting the input trees by the cut value of the first node of each tree
/// \param[out] Return jitted code as string
template <typename T>
inline std::string
BranchlessJittedForest<T>::Load(const std::string &key, const std::string &filename, const int output, const bool sortTrees)
{
   // Open input file and get folder from key
   auto file = TFile::Open(filename.c_str(), "READ");
 
   // Load parameters from file
   auto maxDepth = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/max_depth");
   auto numTrees = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/num_trees");
   auto numInputs = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/num_inputs");
   auto numOutputs = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/num_outputs");
   auto objective = Internal::GetObjectSafe<std::string>(file, filename, key + "/objective");
   auto inputs = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/inputs");
   auto outputs = Internal::GetObjectSafe<std::vector<int>>(file, filename, key + "/outputs");
   auto thresholds = Internal::GetObjectSafe<std::vector<T>>(file, filename, key + "/thresholds");
 
   this->fNumInputs = numInputs->at(0);
   this->fObjectiveFunc = Objectives::GetFunction<T>(*objective);
   const auto lenInputs = std::pow(2, maxDepth->at(0)) - 1;
   const auto lenThresholds = std::pow(2, maxDepth->at(0) + 1) - 1;
 
   // Find number of trees corresponding to given output node
   if (output > numOutputs->at(0))
      throw std::runtime_error("Given output node of the forest is larger or equal to number of output nodes.");
   int c = 0;
   for (int i = 0; i < numTrees->at(0); i++)
      if (outputs->at(i) == output)
         c++;
   if (c == 0)
      std::runtime_error("No trees found for given output node of the forest.");
 
   // Get typename of template argument as string
   std::string typeName = ROOT::Internal::GetDemangledTypeName(typeid(T));
   if (typeName.compare("") == 0) {
      throw std::runtime_error("Failed to just-in-time compile inference code for branchless forest (typename as string)");
   }
 
   // Load parameters in trees
   std::vector<T> firstThreshold(c);
   std::vector<int> firstInput(c, -1);
   std::vector<std::string> codes(c);
   c = 0;
   for (int i = 0; i < numTrees->at(0); i++) {
      // Select only trees for the given output node of the forest
      if (outputs->at(i) != output)
         continue;
 
      // Set tree depth
      BranchlessTree<T> tree;
      tree.fTreeDepth = maxDepth->at(0);
 
      // Set feature indices
      tree.fInputs.resize(lenInputs);
      for (int j = 0; j < lenInputs; j++)
         tree.fInputs[j] = inputs->at(i * lenInputs + j);
 
      // Set threshold values
      tree.fThresholds.resize(lenThresholds);
      for (int j = 0; j < lenThresholds; j++)
         tree.fThresholds[j] = thresholds->at(i * lenThresholds + j);
 
      // Fill sparse trees fully
      tree.FillSparse();
 
      // Save first threshold and input index for ordering the trees later
      firstThreshold[c] = tree.fThresholds[0];
      if (lenInputs != 0)
          firstInput[c] = tree.fInputs[0];
 
      // Save code for jitting
      std::stringstream ss;
      ss << "tree" << c;
      codes[c] = tree.GetInferenceCode(ss.str(), typeName);
 
      c++;
   }
 
   // Sort trees by first cut variable and threshold value
   std::vector<int> treeIndices(codes.size());
   for(int i = 0; i < c; i++) treeIndices[i] = i;
   if (sortTrees) {
      auto compareIndices = [&firstInput, &firstThreshold](int i, int j)
              {
                 if (firstInput[i] == firstInput[j])
                    return firstThreshold[i] < firstThreshold[j];
                 else
                    return firstInput[i] < firstInput[j];
              };
      std::sort(treeIndices.begin(), treeIndices.end(), compareIndices);
   }
 
   // Get unique ID for a private namespace
   TUUID uuid;
   std::string nameSpace = uuid.AsString();
   for (auto& v : nameSpace) {
      if (v == '-') v = '_';
   }
   nameSpace = "ns_" + nameSpace;
 
   // JIT the forest
   std::stringstream jitForest;
   jitForest << "#pragma cling optimize(3)\n"
             << "namespace " << nameSpace << " {\n";
   for (int i = 0; i < static_cast<int>(codes.size()); i++) {
      jitForest << codes[treeIndices[i]] << "\n\n";
   }
   jitForest << "void Inference(const "
             << typeName << "* inputs, const int rows, bool layout, "
             << typeName << "* predictions)"
             << "\n{\n"
             << "   const auto strideTree = layout ? 1 : rows;\n"
             << "   const auto strideBatch = layout ? " << this->fNumInputs << " : 1;\n"
             << "   for (int i = 0; i < rows; i++) {\n"
             << "      predictions[i] = 0.0;\n";
   for (int i = 0; i < static_cast<int>(codes.size()); i++) {
      std::stringstream ss;
      ss << "tree" << i;
      const std::string funcName = ss.str();
      jitForest << "      predictions[i] += " << funcName << "(inputs + i * strideBatch, strideTree);\n";
   }
   jitForest << "   }\n"
             << "}\n"
             << "} // end namespace " << nameSpace;
   const std::string jitForestStr = jitForest.str();
   const auto err = gInterpreter->Declare(jitForestStr.c_str());
   if (err == 0) {
      throw std::runtime_error("Failed to just-in-time compile inference code for branchless forest (declare function)");
   }
 
   // Get function pointer and attach pointer to the forest
   std::stringstream treesFunc;
   treesFunc << "#pragma cling optimize(3)\n" << nameSpace << "::Inference";
   const std::string treesFuncStr = treesFunc.str();
   auto ptr = gInterpreter->Calc(treesFuncStr.c_str());
   if (ptr == 0) {
      throw std::runtime_error("Failed to just-in-time compile inference code for branchless forest (compile function)");
   }
   this->fTrees = reinterpret_cast<void (*)(const T *, int, bool, float*)>(ptr);
 
   // Clean-up
   delete maxDepth;
   delete numTrees;
   delete numInputs;
   delete objective;
   delete inputs;
   delete thresholds;
   file->Close();
 
   return jitForestStr;
}
 
/// Perform inference of the forest with the jitted branchless implementation on a batch of inputs
///
/// \param[in] inputs Pointer to data containing the inputs
/// \param[in] rows Number of events in inputs vector
/// \param[in] layout Row major (true) or column major (false) memory layout
/// \param[in] predictions Pointer to the buffer to be filled with the predictions
template <typename T>
void BranchlessJittedForest<T>::Inference(const T *inputs, const int rows, bool layout, T *predictions)
{
   this->fTrees(inputs, rows, layout, predictions);
   for (int i = 0; i < rows; i++)
      predictions[i] = this->fObjectiveFunc(predictions[i]);
}
 
} // namespace Experimental
} // namespace TMVA
 
#endif // TMVA_TREEINFERENCE_FOREST