Logo ROOT  
Reference Guide
TMVAGui.cxx
Go to the documentation of this file.
1#include "TMVA/TMVAGui.h"
2#include "TMVA/Types.h"
3#include <iostream>
4#include <vector>
5
6#include "TList.h"
7#include "TROOT.h"
8#include "TKey.h"
9#include "TString.h"
10#include "TControlBar.h"
11#include "TObjString.h"
12#include "TClass.h"
13
14
15
16// some global lists
18static std::vector<TString> TMVAGui_inactiveButtons;
19
20TList* TMVA::GetKeyList( const TString& pattern )
21{
22 TList* list = new TList();
23
25 TKey* key(0);
26 while ((key = (TKey*)next())) {
27 if (TString(key->GetName()).Contains( pattern )) { list->Add( new TObjString( key->GetName() ) ); }
28 }
29 return list;
30}
31
32// utility function
34 const TString& title, const TString& macro, const TString& comment,
35 const TString& buttonType, TString requiredKey )
36{
37 cbar->AddButton( title, macro, comment, buttonType );
38
39 // search
40 if (requiredKey != "") {
41 Bool_t found = kFALSE;
43 TKey* key(0);
44 while ((key = (TKey*)next())) {
45 if (TString(key->GetName()).Contains( requiredKey )) { found = kTRUE; break; }
46 }
47 if (!found) TMVAGui_inactiveButtons.push_back( title );
48 }
49}
50
51// main GUI
52void TMVA::TMVAGui( const char* fName , TString dataset)
53{
54 // Use this script in order to run the various individual macros
55 // that plot the output of TMVA (e.g. running TMVAClassification.C),
56 // stored in the file "TMVA.root"
57
58 TString curMacroPath(gROOT->GetMacroPath());
59 // uncomment next line for macros submitted to next root version
60 gROOT->SetMacroPath(curMacroPath+":./:$ROOTSYS/tmva/test/:");
61
62 // for the sourceforge version, including $ROOTSYS/tmva/test in the
63 // macro path is a mistake, especially if "./" was not part of path
64 // add ../macros to the path (comment out next line for the ROOT version of TMVA)
65 // gROOT->SetMacroPath(curMacroPath+":../macros:");
66
67 TString curIncludePath=gSystem->GetIncludePath();
68 TString newIncludePath=TString("-I../ ")+curIncludePath;
69 gSystem->SetIncludePath(newIncludePath);
70
71 cout << "--- Launch TMVA GUI to view input file: " << fName << endl;
72
73 // init
75
76 // check if file exist
77 TFile* file = TFile::Open( fName );
78 if (!file) {
79 cout << "==> Abort TMVAGui, please verify filename" << endl;
80 return;
81 }
82
83 if(file->GetListOfKeys()->GetEntries()<=0)
84 {
85 cout << "==> Abort TMVAGui, please verify if dataset exist" << endl;
86 return;
87 }
88 if( (dataset==""||dataset.IsWhitespace()) && (file->GetListOfKeys()->GetEntries()==1))
89 {
90 TKey *key=(TKey*)file->GetListOfKeys()->At(0);
91 dataset=key->GetName();
92 }else if((dataset==""||dataset.IsWhitespace()) && (file->GetListOfKeys()->GetEntries()>=1))
93 {
94 gROOT->Reset();
95 gStyle->SetScreenFactor(2); // if you have a large screen, select 1,2 or 1.4
96
97 TControlBar *bar=new TControlBar("vertical","Select dataset", 0, 0);
98 bar->SetButtonWidth(300);
99 for(int i=0;i<file->GetListOfKeys()->GetEntries();i++)
100 {
101 TKey *key=(TKey*)file->GetListOfKeys()->At(i);
102 dataset=key->GetName();
103 bar->AddButton(dataset.Data(),Form("TMVA::TMVAGui(\"%s\",\"%s\")",fName,dataset.Data()),dataset.Data());
104 }
105
106 bar->AddSeparator();
107 bar->AddButton( "Quit", ".q", "Quit", "button");
108
109 // set the style
110 bar->SetTextColor("black");
111 bar->Show();
112 gROOT->SaveContext();
113 return ;
114 }
115
116 // find all references
117 TMVAGui_keyContent = (TList*)file->GetDirectory(dataset.Data())->GetListOfKeys()->Clone();
118
119 // close file
120 file->Close();
121
122 TString defaultRequiredClassifier = "";
123
124 // gROOT->Reset();
125 // gStyle->SetScreenFactor(2); // if you have a large screen, select 1,2 or 1.4
126
127 // create the control bar
128 TControlBar* cbar = new TControlBar( "vertical", "TMVA Plotting Macros for Classification", 0, 0 );
129
130 const TString buttonType( "button" );
131
132 // configure buttons
133 Int_t ic = 1;
134
135 // find all input variables types
136 TList* keylist = GetKeyList( "InputVariables" );
137 TListIter it( keylist );
138 TObjString* str = 0;
139 char ch = 'a';
140 while ((str = (TObjString*)it())) {
141 TString tmp = str->GetString();
142 TString title = Form( "Input variables '%s'-transformed (training sample)",
143 tmp.ReplaceAll("InputVariables_","").Data() );
144 if (tmp.Contains( "Id" )) title = "Input variables (training sample)";
145 ActionButton( cbar,
146 Form( "(%i%c) %s", ic, ch++, title.Data() ),
147 Form( "TMVA::variables(\"%s\",\"%s\",\"%s\",\"%s\")",dataset.Data(), fName, str->GetString().Data(), title.Data() ),
148 Form( "Plots all '%s'-transformed input variables (macro variables(...))", str->GetString().Data() ),
149 buttonType, str->GetString() );
150 }
151 ic++;
152
153 // correlation scatter plots
154 it.Reset(); ch = 'a';
155 while ((str = (TObjString*)it())) {
156 TString tmp = str->GetString();
157 TString title = Form( "Input variable correlations '%s'-transformed (scatter profiles)",
158 tmp.ReplaceAll("InputVariables_","").Data() );
159 if (tmp.Contains( "Id" )) title = "Input variable correlations (scatter profiles)";
160 ActionButton( cbar,
161 Form( "(%i%c) %s", ic, ch++, title.Data() ),
162 Form( "TMVA::CorrGui(\"%s\",\"%s\",\"%s\",\"%s\")",dataset.Data(), fName, str->GetString().Data(), title.Data() ),
163 Form( "Plots all correlation profiles between '%s'-transformed input variables (macro CorrGui(...))",
164 str->GetString().Data() ),
165 buttonType, str->GetString() );
166 }
167
168 TString title;
169 // coefficients
170 title =Form( "(%i) Input Variable Linear Correlation Coefficients", ++ic );
171 ActionButton( cbar,
172 title,
173 Form( "TMVA::correlations(\"%s\",\"%s\")",dataset.Data(), fName ),
174 "Plots signal and background correlation summaries for all input variables (macro correlations.C)",
175 buttonType );
176
177 title =Form( "(%ia) Classifier Output Distributions (test sample)", ++ic );
178 ActionButton( cbar,
179 title,
180 Form( "TMVA::mvas(\"%s\",\"%s\", TMVA::kMVAType)",dataset.Data(), fName ),
181 "Plots the output of each classifier for the test data (macro mvas(...,0))",
182 buttonType, defaultRequiredClassifier );
183
184 title =Form( "(%ib) Classifier Output Distributions (test and training samples superimposed)", ic );
185 ActionButton( cbar,
186 title,
187 Form( "TMVA::mvas(\"%s\",\"%s\", TMVA::kCompareType )",dataset.Data(), fName),
188 "Plots the output of each classifier for the test (histograms) and training (dots) data (macro mvas(...,3))",
189 buttonType, defaultRequiredClassifier );
190
191 title = Form( "(%ic) Classifier Probability Distributions (test sample)", ic );
192 ActionButton( cbar,
193 title,
194 Form( "TMVA::mvas(\"%s\",\"%s\", TMVA::kProbaType)",dataset.Data(), fName ),
195 "Plots the probability of each classifier for the test data (macro mvas(...,1))",
196 buttonType, defaultRequiredClassifier );
197
198 title =Form( "(%id) Classifier Rarity Distributions (test sample)", ic );
199 ActionButton( cbar,
200 title,
201 Form( "TMVA::mvas(\"%s\",\"%s\", TMVA::kRarityType)",dataset.Data(), fName ),
202 "Plots the Rarity of each classifier for the test data (macro mvas(...,2)) - background distribution should be uniform",
203 buttonType, defaultRequiredClassifier );
204
205 title =Form( "(%ia) Classifier Cut Efficiencies", ++ic );
206 ActionButton( cbar,
207 title,
208 Form( "TMVA::mvaeffs(\"%s\",\"%s\")",dataset.Data(), fName ),
209 "Plots signal and background efficiencies versus cut on classifier output (macro mvaeffs.cxx)",
210 buttonType, defaultRequiredClassifier );
211
212 title = Form( "(%ib) Classifier Background Rejection vs Signal Efficiency (ROC curve)", ic );
213 ActionButton( cbar,
214 title,
215 Form( "TMVA::efficiencies(\"%s\",\"%s\")",dataset.Data(), fName ),
216 "Plots background rejection vs signal efficiencies (macro efficiencies.cxx) [\"ROC\" stands for \"Receiver Operation Characteristics\"]",
217 buttonType, defaultRequiredClassifier );
218
219 title = Form( "(%ib) Classifier 1/(Backgr. Efficiency) vs Signal Efficiency (ROC curve)", ic );
220 ActionButton( cbar,
221 title,
222 Form( "TMVA::efficiencies(\"%s\",\"%s\",%d)",dataset.Data(), fName, 3 ),
223 "Plots 1/(background eff.) vs signal efficiencies (macro efficiencies.cxx) [\"ROC\" stands for \"Receiver Operation Characteristics\"]",
224 buttonType, defaultRequiredClassifier );
225
226 title = Form( "(%i) Parallel Coordinates (requires ROOT-version >= 5.17)", ++ic );
227 ActionButton( cbar,
228 title,
229 Form( "TMVA::paracoor(\"%s\",\"%s\")",dataset.Data(), fName ),
230 "Plots parallel coordinates for classifiers and input variables (macro paracoor.cxx, requires ROOT >= 5.17)",
231 buttonType, defaultRequiredClassifier );
232
233 title =Form( "(%i) PDFs of Classifiers (requires \"CreateMVAPdfs\" option set)", ++ic );
234 ActionButton( cbar,
235 title,
236 Form( "TMVA::probas(\"%s\",\"%s\")",dataset.Data(), fName ),
237 "Plots the PDFs of the classifier output distributions for signal and background - if requested (macro probas.cxx)",
238 buttonType, defaultRequiredClassifier );
239
240 title = Form( "(%i) Training History", ++ic );
241 ActionButton( cbar,
242 title,
243 Form( "TMVA::training_history(\"%s\",\"%s\")",dataset.Data(), fName ),
244 "Plot training history of classifiers with multiple passed (eg Neural Networks) ",
245 buttonType, defaultRequiredClassifier );
246
247 title = Form( "(%i) Likelihood Reference Distributiuons", ++ic);
248 ActionButton( cbar,
249 title,
250 Form( "TMVA::likelihoodrefs(\"%s\",\"%s\")",dataset.Data(), fName ),
251 "Plots to verify the likelihood reference distributions (macro likelihoodrefs.cxx)",
252 buttonType, "Likelihood" );
253
254 title = Form( "(%ia) Network Architecture (MLP)", ++ic );
255 TString call = Form( "TMVA::network(\"%s\",\"%s\")", dataset.Data(),fName );
256 ActionButton( cbar,
257 title,
258 call,
259 "Plots the MLP weights (macro network.cxx)",
260 buttonType, "MLP" );
261
262 title = Form( "(%ib) Network Convergence Test (MLP)", ic );
263 ActionButton( cbar,
264 title,
265 Form( "TMVA::annconvergencetest(\"%s\",\"%s\")",dataset.Data(), fName ),
266 "Plots error estimator versus training epoch for training and test samples (macro annconvergencetest.C)",
267 buttonType, "MLP" );
268
269 title = Form( "(%i) Decision Trees (BDT)", ++ic );
270 ActionButton( cbar,
271 title,
272 Form( "TMVA::BDT(\"%s\",\"%s\")",dataset.Data() , fName ),
273 "Plots the Decision Trees trained by BDT algorithms (macro BDT(itree,...))",
274 buttonType, "BDT" );
275
276 title = Form( "(%i) Decision Tree Control Plots (BDT)", ++ic );
277 ActionButton( cbar,
278 title,
279 Form( "TMVA::BDTControlPlots(\"%s\",\"%s\")",dataset.Data() , fName ),
280 "Plots to monitor boosting and pruning of decision trees (macro BDTControlPlots.cxx)",
281 buttonType, "BDT" );
282 // ActionButton( cbar,
283 // Form( "(%i) Rule Ensemble Importance Plots (RuleFit)", ++ic ),
284 // Form( "TMVA::rulevis(\"%s\",0)", fName ),
285 // "Plots all input variables with rule ensemble weights, including linear terms (macro rulevis.cxx)",
286 // buttonType, "RuleFit" );
287
288 title = Form( "(%i) Plot Foams (PDEFoam)", ++ic );
289 ActionButton( cbar,
290 title,
291 Form("TMVA::PlotFoams(\"%s/weights/TMVAClassification_PDEFoam.weights_foams.root\")",dataset.Data()),
292 "Plot Foams (macro PlotFoams.cxx)",
293 buttonType, "PDEFoam" );
294
295 title = Form( "(%i) General Boost Control Plots", ++ic );
296 ActionButton( cbar,
297 title,
298 Form( "TMVA::BoostControlPlots(\"%s\",\"%s\")",dataset.Data() , fName ),
299 "Plots to monitor boosting of general classifiers (macro BoostControlPlots)",
300 buttonType, "Boost" );
301
302 cbar->AddSeparator();
303
304 cbar->AddButton( Form( "(%i) Quit", ++ic ), ".q", "Quit", buttonType );
305
306 // set the style
307 cbar->SetTextColor("black");
308
309 // there seems to be a bug in ROOT: font jumps back to default after pressing on >2 different buttons
310 // cbar->SetFont("-adobe-helvetica-bold-r-*-*-12-*-*-*-*-*-iso8859-1");
311
312 // draw
313 cbar->Show();
314
315 // indicate inactive buttons
316 for (UInt_t i=0; i<TMVAGui_inactiveButtons.size(); i++) cbar->SetButtonState(TMVAGui_inactiveButtons[i], 3 );
317 if (TMVAGui_inactiveButtons.size() > 0) {
318 cout << "=== Note: inactive buttons indicate classifiers that were not trained, ===" << endl;
319 cout << "=== or functionalities that were not invoked during the training ===" << endl;
320 }
321
322 gROOT->SaveContext();
323}
int Int_t
Definition: RtypesCore.h:41
unsigned int UInt_t
Definition: RtypesCore.h:42
const Bool_t kFALSE
Definition: RtypesCore.h:88
bool Bool_t
Definition: RtypesCore.h:59
const Bool_t kTRUE
Definition: RtypesCore.h:87
static TList * TMVAGui_keyContent
Definition: TMVAGui.cxx:17
static std::vector< TString > TMVAGui_inactiveButtons
Definition: TMVAGui.cxx:18
#define gROOT
Definition: TROOT.h:415
char * Form(const char *fmt,...)
R__EXTERN TStyle * gStyle
Definition: TStyle.h:407
R__EXTERN TSystem * gSystem
Definition: TSystem.h:560
A Control Bar is a fully user configurable tool which provides fast access to frequently used operati...
Definition: TControlBar.h:22
void Show()
Show control bar.
void AddSeparator()
Add separator.
void SetButtonState(const char *label, Int_t state=0)
Sets a state for control bar button 'label'; possible states are 0-kButtonUp, 1-kButtonDown,...
void AddButton(TControlBarButton *button)
Add button.
void SetTextColor(const char *colorName)
Sets text color for control bar buttons, e.g.
A ROOT file is a suite of consecutive data records (TKey instances) with a well defined format.
Definition: TFile.h:48
static TFile * Open(const char *name, Option_t *option="", const char *ftitle="", Int_t compress=ROOT::RCompressionSetting::EDefaults::kUseCompiledDefault, Int_t netopt=0)
Create / open a file.
Definition: TFile.cxx:3923
Book space in a file, create I/O buffers, to fill them, (un)compress them.
Definition: TKey.h:24
Iterator of linked list.
Definition: TList.h:200
A doubly linked list.
Definition: TList.h:44
virtual void Add(TObject *obj)
Definition: TList.h:87
virtual const char * GetName() const
Returns name of object.
Definition: TNamed.h:47
Collectable string class.
Definition: TObjString.h:28
const TString & GetString() const
Definition: TObjString.h:46
Basic string class.
Definition: TString.h:131
const char * Data() const
Definition: TString.h:364
TString & ReplaceAll(const TString &s1, const TString &s2)
Definition: TString.h:687
Bool_t IsWhitespace() const
Definition: TString.h:403
Bool_t Contains(const char *pat, ECaseCompare cmp=kExact) const
Definition: TString.h:619
void SetScreenFactor(Float_t factor=1)
Definition: TStyle.h:298
virtual const char * GetIncludePath()
Get the list of include path.
Definition: TSystem.cxx:3955
virtual void SetIncludePath(const char *includePath)
IncludePath should contain the list of compiler flags to indicate where to find user defined header f...
Definition: TSystem.cxx:4168
static constexpr double bar
UInt_t GetListOfKeys(TList &keys, TString inherits, TDirectory *dir=0)
Definition: tmvaglob.cxx:375
void ActionButton(TControlBar *cbar, const TString &title, const TString &macro, const TString &comment, const TString &buttonType, TString requiredKey="")
TList * GetKeyList(const TString &pattern)
void TMVAGui(const char *fName="TMVA.root", TString dataset="")
Definition: file.py:1