RooNLLVar.cxx

Go to the documentation of this file.

/*****************************************************************************
 * Project: RooFit                                                           *
 * Package: RooFitCore                                                       *
 * @(#)root/roofitcore:$Id$
 * Authors:                                                                  *
 *   WV, Wouter Verkerke, UC Santa Barbara, verkerke@slac.stanford.edu       *
 *   DK, David Kirkby,    UC Irvine,         dkirkby@uci.edu                 *
 *                                                                           *
 * Copyright (c) 2000-2005, Regents of the University of California          *
 *                          and Stanford University. All rights reserved.    *
 *                                                                           *
 * Redistribution and use in source and binary forms,                        *
 * with or without modification, are permitted according to the terms        *
 * listed in LICENSE (http://roofit.sourceforge.net/license.txt)             *
 *****************************************************************************/
 
/**
\file RooNLLVar.cxx
\class RooNLLVar
\ingroup Roofitcore
 
Class RooNLLVar implements a -log(likelihood) calculation from a dataset
and a PDF. The NLL is calculated as
\f[
 \sum_\mathrm{data} -\log( \mathrmp{pdf}(x_\mathrm{data})
\f]
In extended mode, a
\f$ N_mathrm{expect} - N_mathrm{observed}*log(N_mathrm{expect}) \f$ term is added.
**/
 
#include "RooNLLVar.h"
 
#include "RooFit.h"
#include "Riostream.h"
#include "TMath.h"
 
#include "RooAbsData.h"
#include "RooAbsPdf.h"
#include "RooCmdConfig.h"
#include "RooMsgService.h"
#include "RooAbsDataStore.h"
#include "RooRealMPFE.h"
#include "RooRealSumPdf.h"
#include "RooRealVar.h"
#include "RooProdPdf.h"
#include "RooHelpers.h"
 
#include "Math/Util.h"
 
#include <algorithm>
 
ClassImp(RooNLLVar)
 
RooArgSet RooNLLVar::_emptySet ;
 
 
////////////////////////////////////////////////////////////////////////////////
/// Construct likelihood from given p.d.f and (binned or unbinned dataset)
///
///  Argument                 | Description
///  -------------------------|------------
///  Extended()               | Include extended term in calculation
///  NumCPU()                 | Activate parallel processing feature
///  Range()                  | Fit only selected region
///  SumCoefRange()           | Set the range in which to interpret the coefficients of RooAddPdf components
///  SplitRange()             | Fit range is split by index catory of simultaneous PDF
///  ConditionalObservables() | Define conditional observables
///  Verbose()                | Verbose output of GOF framework classes
///  CloneData()              | Clone input dataset for internal use (default is kTRUE)
///  BatchMode()              | Evaluate batches of data events (faster if PDFs support it)
 
RooNLLVar::RooNLLVar(const char *name, const char* title, RooAbsPdf& pdf, RooAbsData& indata,
           const RooCmdArg& arg1, const RooCmdArg& arg2,const RooCmdArg& arg3,
           const RooCmdArg& arg4, const RooCmdArg& arg5,const RooCmdArg& arg6,
           const RooCmdArg& arg7, const RooCmdArg& arg8,const RooCmdArg& arg9) :
  RooAbsOptTestStatistic(name,title,pdf,indata,
          *(const RooArgSet*)RooCmdConfig::decodeObjOnTheFly("RooNLLVar::RooNLLVar","ProjectedObservables",0,&_emptySet
                               ,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9),
          RooCmdConfig::decodeStringOnTheFly("RooNLLVar::RooNLLVar","RangeWithName",0,"",arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9).c_str(),
          RooCmdConfig::decodeStringOnTheFly("RooNLLVar::RooNLLVar","AddCoefRange",0,"",arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9).c_str(),
          RooCmdConfig::decodeIntOnTheFly("RooNLLVar::RooNLLVar","NumCPU",0,1,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9),
          RooFit::BulkPartition,
          RooCmdConfig::decodeIntOnTheFly("RooNLLVar::RooNLLVar","Verbose",0,1,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9),
          RooCmdConfig::decodeIntOnTheFly("RooNLLVar::RooNLLVar","SplitRange",0,0,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9),
          RooCmdConfig::decodeIntOnTheFly("RooNLLVar::RooNLLVar","CloneData",0,1,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9))
{
  RooCmdConfig pc("RooNLLVar::RooNLLVar") ;
  pc.allowUndefined() ;
  pc.defineInt("extended","Extended",0,kFALSE) ;
  pc.defineInt("BatchMode", "BatchMode", 0, false);
 
  pc.process(arg1) ;  pc.process(arg2) ;  pc.process(arg3) ;
  pc.process(arg4) ;  pc.process(arg5) ;  pc.process(arg6) ;
  pc.process(arg7) ;  pc.process(arg8) ;  pc.process(arg9) ;
 
  _extended = pc.getInt("extended") ;
  _batchEvaluations = pc.getInt("BatchMode");
  _weightSq = kFALSE ;
  _first = kTRUE ;
  _offset = 0.;
  _offsetCarry = 0.;
  _offsetSaveW2 = 0.;
  _offsetCarrySaveW2 = 0.;
 
  _binnedPdf = 0 ;
}
 
 
 
////////////////////////////////////////////////////////////////////////////////
/// Construct likelihood from given p.d.f and (binned or unbinned dataset)
/// For internal use.
 
RooNLLVar::RooNLLVar(const char *name, const char *title, RooAbsPdf& pdf, RooAbsData& indata,
           Bool_t extended, const char* rangeName, const char* addCoefRangeName,
           Int_t nCPU, RooFit::MPSplit interleave, Bool_t verbose, Bool_t splitRange, Bool_t cloneData, Bool_t binnedL) :
  RooAbsOptTestStatistic(name,title,pdf,indata,RooArgSet(),rangeName,addCoefRangeName,nCPU,interleave,verbose,splitRange,cloneData),
  _extended(extended),
  _weightSq(kFALSE),
  _first(kTRUE), _offsetSaveW2(0.), _offsetCarrySaveW2(0.)
{
  // If binned likelihood flag is set, pdf is a RooRealSumPdf representing a yield vector
  // for a binned likelihood calculation
  _binnedPdf = binnedL ? (RooRealSumPdf*)_funcClone : 0 ;
 
  // Retrieve and cache bin widths needed to convert unnormalized binnedPdf values back to yields
  if (_binnedPdf) {
 
    // The Active label will disable pdf integral calculations
    _binnedPdf->setAttribute("BinnedLikelihoodActive") ;
 
    RooArgSet* obs = _funcClone->getObservables(_dataClone) ;
    if (obs->getSize()!=1) {
      _binnedPdf = 0 ;
    } else {
      RooRealVar* var = (RooRealVar*) obs->first() ;
      std::list<Double_t>* boundaries = _binnedPdf->binBoundaries(*var,var->getMin(),var->getMax()) ;
      std::list<Double_t>::iterator biter = boundaries->begin() ;
      _binw.resize(boundaries->size()-1) ;
      Double_t lastBound = (*biter) ;
      ++biter ;
      int ibin=0 ;
      while (biter!=boundaries->end()) {
   _binw[ibin] = (*biter) - lastBound ;
   lastBound = (*biter) ;
   ibin++ ;
   ++biter ;
      }
    }
  }
}
 
 
 
////////////////////////////////////////////////////////////////////////////////
/// Construct likelihood from given p.d.f and (binned or unbinned dataset)
/// For internal use.
 
RooNLLVar::RooNLLVar(const char *name, const char *title, RooAbsPdf& pdf, RooAbsData& indata,
           const RooArgSet& projDeps, Bool_t extended, const char* rangeName,const char* addCoefRangeName,
           Int_t nCPU,RooFit::MPSplit interleave,Bool_t verbose, Bool_t splitRange, Bool_t cloneData, Bool_t binnedL) :
  RooAbsOptTestStatistic(name,title,pdf,indata,projDeps,rangeName,addCoefRangeName,nCPU,interleave,verbose,splitRange,cloneData),
  _extended(extended),
  _weightSq(kFALSE),
  _first(kTRUE), _offsetSaveW2(0.), _offsetCarrySaveW2(0.)
{
  // If binned likelihood flag is set, pdf is a RooRealSumPdf representing a yield vector
  // for a binned likelihood calculation
  _binnedPdf = binnedL ? (RooRealSumPdf*)_funcClone : 0 ;
 
  // Retrieve and cache bin widths needed to convert unnormalized binnedPdf values back to yields
  if (_binnedPdf) {
 
    RooArgSet* obs = _funcClone->getObservables(_dataClone) ;
    if (obs->getSize()!=1) {
      _binnedPdf = 0 ;
    } else {
      RooRealVar* var = (RooRealVar*) obs->first() ;
      std::list<Double_t>* boundaries = _binnedPdf->binBoundaries(*var,var->getMin(),var->getMax()) ;
      std::list<Double_t>::iterator biter = boundaries->begin() ;
      _binw.resize(boundaries->size()-1) ;
      Double_t lastBound = (*biter) ;
      ++biter ;
      int ibin=0 ;
      while (biter!=boundaries->end()) {
   _binw[ibin] = (*biter) - lastBound ;
   lastBound = (*biter) ;
   ibin++ ;
   ++biter ;
      }
    }
  }
}
 
 
 
////////////////////////////////////////////////////////////////////////////////
/// Copy constructor
 
RooNLLVar::RooNLLVar(const RooNLLVar& other, const char* name) :
  RooAbsOptTestStatistic(other,name),
  _extended(other._extended),
  _batchEvaluations(other._batchEvaluations),
  _weightSq(other._weightSq),
  _first(kTRUE), _offsetSaveW2(other._offsetSaveW2),
  _offsetCarrySaveW2(other._offsetCarrySaveW2),
  _binw(other._binw) {
  _binnedPdf = other._binnedPdf ? (RooRealSumPdf*)_funcClone : 0 ;
}
 
 
 
 
////////////////////////////////////////////////////////////////////////////////
/// Destructor
 
RooNLLVar::~RooNLLVar()
{
}
 
 
 
 
////////////////////////////////////////////////////////////////////////////////
 
void RooNLLVar::applyWeightSquared(Bool_t flag)
{
  if (_gofOpMode==Slave) {
    if (flag != _weightSq) {
      _weightSq = flag;
      std::swap(_offset, _offsetSaveW2);
      std::swap(_offsetCarry, _offsetCarrySaveW2);
    }
    setValueDirty();
  } else if ( _gofOpMode==MPMaster) {
    for (Int_t i=0 ; i<_nCPU ; i++)
      _mpfeArray[i]->applyNLLWeightSquared(flag);
  } else if ( _gofOpMode==SimMaster) {
    for (Int_t i=0 ; i<_nGof ; i++)
      ((RooNLLVar*)_gofArray[i])->applyWeightSquared(flag);
  }
}
 
 
////////////////////////////////////////////////////////////////////////////////
/// Calculate and return likelihood on subset of data.
/// \param[in] firstEvent First event to be processed.
/// \param[in] lastEvent  First event not to be processed, any more.
/// \param[in] stepSize   Steps between events.
/// \note For batch computations, the step size **must** be one.
///
/// If this an extended likelihood, the extended term is added to the return likelihood
/// in the batch that encounters the event with index 0.
 
Double_t RooNLLVar::evaluatePartition(std::size_t firstEvent, std::size_t lastEvent, std::size_t stepSize) const
{
  // Throughout the calculation, we use Kahan's algorithm for summing to
  // prevent loss of precision - this is a factor four more expensive than
  // straight addition, but since evaluating the PDF is usually much more
  // expensive than that, we tolerate the additional cost...
  double result(0), carry(0), sumWeight(0);
 
  RooAbsPdf* pdfClone = (RooAbsPdf*) _funcClone ;
 
  // cout << "RooNLLVar::evaluatePartition(" << GetName() << ") projDeps = " << (_projDeps?*_projDeps:RooArgSet()) << endl ;
 
  _dataClone->store()->recalculateCache( _projDeps, firstEvent, lastEvent, stepSize, (_binnedPdf?kFALSE:kTRUE) ) ;
 
 
 
  // If pdf is marked as binned - do a binned likelihood calculation here (sum of log-Poisson for each bin)
  if (_binnedPdf) {
    double sumWeightCarry = 0.;
    for (auto i=firstEvent ; i<lastEvent ; i+=stepSize) {
 
      _dataClone->get(i) ;
 
      if (!_dataClone->valid()) continue;
 
      Double_t eventWeight = _dataClone->weight();
 
 
      // Calculate log(Poisson(N|mu) for this bin
      Double_t N = eventWeight ;
      Double_t mu = _binnedPdf->getVal()*_binw[i] ;
      //cout << "RooNLLVar::binnedL(" << GetName() << ") N=" << N << " mu = " << mu << endl ;
 
      if (mu<=0 && N>0) {
 
        // Catch error condition: data present where zero events are predicted
        logEvalError(Form("Observed %f events in bin %lu with zero event yield",N,(unsigned long)i)) ;
 
      } else if (fabs(mu)<1e-10 && fabs(N)<1e-10) {
 
        // Special handling of this case since log(Poisson(0,0)=0 but can't be calculated with usual log-formula
        // since log(mu)=0. No update of result is required since term=0.
 
      } else {
 
        Double_t term = -1*(-mu + N*log(mu) - TMath::LnGamma(N+1)) ;
 
        // TODO replace by Math::KahanSum
        // Kahan summation of sumWeight
        Double_t y = eventWeight - sumWeightCarry;
        Double_t t = sumWeight + y;
        sumWeightCarry = (t - sumWeight) - y;
        sumWeight = t;
 
        // Kahan summation of result
        y = term - carry;
        t = result + y;
        carry = (t - result) - y;
        result = t;
      }
    }
 
 
  } else { //unbinned PDF
 
    if (_batchEvaluations) {
      std::tie(result, carry, sumWeight) = computeBatched(stepSize, firstEvent, lastEvent);
#ifdef ROOFIT_CHECK_CACHED_VALUES
 
      double resultScalar, carryScalar, sumWeightScalar;
      std::tie(resultScalar, carryScalar, sumWeightScalar) =
          computeScalar(stepSize, firstEvent, lastEvent);
 
      constexpr bool alwaysPrint = false;
 
      if (alwaysPrint || fabs(result - resultScalar)/resultScalar > 1.E-15) {
        std::cerr << "RooNLLVar: result is off\n\t" << std::setprecision(15) << result
            << "\n\t" << resultScalar << std::endl;
      }
 
      if (alwaysPrint || fabs(carry - carryScalar)/carryScalar > 10.) {
        std::cerr << "RooNLLVar: carry is far off\n\t" << std::setprecision(15) << carry
            << "\n\t" << carryScalar << std::endl;
      }
 
      if (alwaysPrint || fabs(sumWeight - sumWeightScalar)/sumWeightScalar > 1.E-15) {
        std::cerr << "RooNLLVar: sumWeight is off\n\t" << std::setprecision(15) << sumWeight
            << "\n\t" << sumWeightScalar << std::endl;
      }
 
#endif
    } else { //scalar mode
      std::tie(result, carry, sumWeight) = computeScalar(stepSize, firstEvent, lastEvent);
    }
 
    // include the extended maximum likelihood term, if requested
    if(_extended && _setNum==_extSet) {
      if (_weightSq) {
 
        // TODO Batch this up
        // Calculate sum of weights-squared here for extended term
        Double_t sumW2(0), sumW2carry(0);
        for (decltype(_dataClone->numEntries()) i = 0; i < _dataClone->numEntries() ; i++) {
          _dataClone->get(i);
          Double_t y = _dataClone->weightSquared() - sumW2carry;
          Double_t t = sumW2 + y;
          sumW2carry = (t - sumW2) - y;
          sumW2 = t;
        }
 
        Double_t expected= pdfClone->expectedEvents(_dataClone->get());
 
        // Adjust calculation of extended term with W^2 weighting: adjust poisson such that
        // estimate of Nexpected stays at the same value, but has a different variance, rescale
        // both the observed and expected count of the Poisson with a factor sum[w] / sum[w^2] which is
        // the effective weight of the Poisson term.
        // i.e. change Poisson(Nobs = sum[w]| Nexp ) --> Poisson( sum[w] * sum[w] / sum[w^2] | Nexp * sum[w] / sum[w^2] )
        // weighted by the effective weight  sum[w^2]/ sum[w] in the likelihood.
        // Since here we compute the likelihood with the weight square we need to multiply by the
        // square of the effective weight
        // expectedW = expected * sum[w] / sum[w^2]   : effective expected entries
        // observedW =  sum[w]  * sum[w] / sum[w^2]   : effective observed entries
        // The extended term for the likelihood weighted by the square of the weight will be then:
        //  (sum[w^2]/ sum[w] )^2 * expectedW -  (sum[w^2]/ sum[w] )^2 * observedW * log (expectedW)  and this is
        //  using the previous expressions for expectedW and observedW
        //  sum[w^2] / sum[w] * expected - sum[w^2] * log (expectedW)
        //  and since the weights are constants in the likelihood we can use log(expected) instead of log(expectedW)
 
        Double_t expectedW2 = expected * sumW2 / _dataClone->sumEntries() ;
        Double_t extra= expectedW2 - sumW2*log(expected );
 
        // Double_t y = pdfClone->extendedTerm(sumW2, _dataClone->get()) - carry;
 
        Double_t y = extra - carry ;
 
        Double_t t = result + y;
        carry = (t - result) - y;
        result = t;
      } else {
        Double_t y = pdfClone->extendedTerm(_dataClone->sumEntries(), _dataClone->get()) - carry;
        Double_t t = result + y;
        carry = (t - result) - y;
        result = t;
      }
    }
  } //unbinned PDF
 
 
  // If part of simultaneous PDF normalize probability over
  // number of simultaneous PDFs: -sum(log(p/n)) = -sum(log(p)) + N*log(n)
  if (_simCount>1) {
    Double_t y = sumWeight*log(1.0*_simCount) - carry;
    Double_t t = result + y;
    carry = (t - result) - y;
    result = t;
  }
 
 
  // At the end of the first full calculation, wire the caches
  if (_first) {
    _first = kFALSE ;
    _funcClone->wireAllCaches() ;
  }
 
 
  // Check if value offset flag is set.
  if (_doOffset) {
 
    // If no offset is stored enable this feature now
    if (_offset==0 && result !=0 ) {
      coutI(Minimization) << "RooNLLVar::evaluatePartition(" << GetName() << ") first = "<< firstEvent << " last = " << lastEvent << " Likelihood offset now set to " << result << std::endl ;
      _offset = result ;
      _offsetCarry = carry;
    }
 
    // Subtract offset
    Double_t y = -_offset - (carry + _offsetCarry);
    Double_t t = result + y;
    carry = (t - result) - y;
    result = t;
  }
 
 
  _evalCarry = carry;
  return result ;
}
 
 
std::tuple<double, double, double> RooNLLVar::computeBatched(std::size_t stepSize, std::size_t firstEvent, std::size_t lastEvent) const
{
  if (stepSize != 1) {
    throw std::invalid_argument(std::string("Error in ") + __FILE__ + ": Step size for batch computations can only be 1.");
  }
 
  auto pdfClone = static_cast<const RooAbsPdf*>(_funcClone);
 
  auto results = pdfClone->getLogValBatch(firstEvent, lastEvent-firstEvent, _normSet);
 
 
#ifdef ROOFIT_CHECK_CACHED_VALUES
  for (std::size_t evtNo = firstEvent; evtNo < lastEvent; ++evtNo) {
    _dataClone->get(evtNo);
    assert(_dataClone->valid());
    pdfClone->getValV(_normSet);
    try {
      RooHelpers::BatchInterfaceAccessor::checkBatchComputation(*pdfClone, evtNo, _normSet);
    } catch (std::exception& e) {
      std::cerr << "ERROR when checking batch computation for event " << evtNo << ":\n"
          << e.what() << std::endl;
    }
  }
#endif
 
 
  // Compute sum of event weights. First check if we need squared weights
  const RooSpan<const double> eventWeights = _dataClone->getWeightBatch(firstEvent, lastEvent);
  //Make it obvious for the optimiser that the switch will never change while looping
  const bool retrieveSquaredWeights = _weightSq;
  auto retrieveWeight = [&eventWeights, retrieveSquaredWeights](std::size_t i) {
    if (retrieveSquaredWeights)
      return eventWeights[i] * eventWeights[i];
    else
      return eventWeights[i];
  };
 
  //Sum the event weights
  ROOT::Math::KahanSum<double, 4u> kahanWeight;
  if (eventWeights.size() == 1) {
    kahanWeight.Add( (lastEvent - firstEvent) * retrieveWeight(0));
  } else {
    for (std::size_t i = 0; i < eventWeights.size(); ++i) {
      kahanWeight.AddIndexed(retrieveWeight(i), i);
    }
  }
 
 
  //Sum the probabilities
  ROOT::Math::KahanSum<double, 4u> kahanProb;
  if (eventWeights.size() == 1) {
    const double weight = retrieveWeight(0);
    for (std::size_t i = 0; i < results.size(); ++i) {
      kahanProb.AddIndexed(-weight * results[i], i);
    }
  } else {
    for (std::size_t i = 0; i < results.size(); ++i) {
      kahanProb.AddIndexed(-retrieveWeight(i) * results[i], i);
    }
  }
 
 
  return std::tuple<double, double, double>{kahanProb.Sum(), kahanProb.Carry(), kahanWeight.Sum()};
}
 
 
std::tuple<double, double, double> RooNLLVar::computeScalar(std::size_t stepSize, std::size_t firstEvent, std::size_t lastEvent) const {
  auto pdfClone = static_cast<const RooAbsPdf*>(_funcClone);
 
  ROOT::Math::KahanSum<double> kahanWeight;
  ROOT::Math::KahanSum<double> kahanProb;
 
  for (auto i=firstEvent; i<lastEvent; i+=stepSize) {
    _dataClone->get(i) ;
 
    if (!_dataClone->valid()) continue;
 
    Double_t eventWeight = _dataClone->weight(); //FIXME
    if (0. == eventWeight * eventWeight) continue ;
    if (_weightSq) eventWeight = _dataClone->weightSquared() ;
 
    const double term = -eventWeight * pdfClone->getLogVal(_normSet);
 
    kahanWeight.Add(eventWeight);
    kahanProb.Add(term);
  }
 
  return std::tuple<double, double, double>{kahanProb.Sum(), kahanProb.Carry(), kahanWeight.Sum()};
}