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StandardProfileInspectorDemo.C File Reference
Tutorials » RooFit packages tutorials » RooStats

Detailed Description

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Standard demo of the ProfileInspector class StandardProfileInspectorDemo

This is a standard demo that can be used with any ROOT file prepared in the standard way. You specify:

  • name for input ROOT file
  • name of workspace inside ROOT file that holds model and data
  • name of ModelConfig that specifies details for calculator tools
  • name of dataset

With default parameters the macro will attempt to run the standard hist2workspace example and read the ROOT file that it produces.

The actual heart of the demo is only about 10 lines long.

The ProfileInspector plots the conditional maximum likelihood estimate of each nuisance parameter in the model vs. the parameter of interest. (aka. profiled value of nuisance parameter vs. parameter of interest) (aka. best fit nuisance parameter with p.o.i fixed vs. parameter of interest)

[#1] INFO:Minimization -- p.d.f. provides expected number of events, including extended term in likelihood.
[#1] INFO:Minimization -- Including the following constraint terms in minimization: (lumiConstraint,alpha_syst1Constraint,alpha_syst2Constraint,alpha_syst3Constraint,gamma_stat_channel1_bin_0_constraint,gamma_stat_channel1_bin_1_constraint)
[#1] INFO:Minimization -- The global observables are not defined , normalize constraints with respect to the parameters (Lumi,SigXsecOverSM,alpha_syst1,alpha_syst2,alpha_syst3,gamma_stat_channel1_bin_0,gamma_stat_channel1_bin_1)
[#1] INFO:Fitting -- RooAbsPdf::fitTo(simPdf) fixing normalization set for coefficient determination to observables in data
[#1] INFO:Fitting -- using generic CPU library compiled with no vectorizations
[#1] INFO:Fitting -- Creation of NLL object took 7.13617 ms
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) Creating instance of MINUIT
[#1] INFO:Fitting -- RooAddition::defaultErrorLevel(nll_simPdf_obsData) Summation contains a RooNLLVar, using its error level
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) determining minimum likelihood for current configurations w.r.t all observable
[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
[#1] INFO:NumericIntegration -- RooRealIntegral::init(gamma_stat_channel1_bin_1_constraint_Int[gamma_stat_channel1_bin_1]) using numeric integrator RooIntegrator1D to calculate Int(gamma_stat_channel1_bin_1)
[#1] INFO:NumericIntegration -- RooRealIntegral::init(gamma_stat_channel1_bin_0_constraint_Int[gamma_stat_channel1_bin_0]) using numeric integrator RooIntegrator1D to calculate Int(gamma_stat_channel1_bin_0)
[#1] INFO:Minimization -- RooProfileLL::evaluate(RooEvaluatorWrapper_Profile[SigXsecOverSM]) minimum found at (SigXsecOverSM=1.11273)
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
.[#1] INFO:Minimization -- [fitFCN] No discrete parameters, performing continuous minimization only
#include "TFile.h"
#include "TROOT.h"
#include "TCanvas.h"
#include "TList.h"
#include "TMath.h"
#include "TSystem.h"
#include "RooWorkspace.h"
#include "RooAbsData.h"
#include "RooStats/ModelConfig.h"
#include "RooStats/ProfileInspector.h"
using namespace RooFit;
using namespace RooStats;
void StandardProfileInspectorDemo(const char *infile = "", const char *workspaceName = "combined",
const char *modelConfigName = "ModelConfig", const char *dataName = "obsData")
{
// -------------------------------------------------------
// First part is just to access a user-defined file
// or create the standard example file if it doesn't exist
const char *filename = "";
if (!strcmp(infile, "")) {
filename = "results/example_combined_GaussExample_model.root";
bool fileExist = !gSystem->AccessPathName(filename); // note opposite return code
// if file does not exists generate with histfactory
if (!fileExist) {
// Normally this would be run on the command line
cout << "will run standard hist2workspace example" << endl;
gROOT->ProcessLine(".! prepareHistFactory .");
gROOT->ProcessLine(".! hist2workspace config/example.xml");
cout << "\n\n---------------------" << endl;
cout << "Done creating example input" << endl;
cout << "---------------------\n\n" << endl;
}
} else
filename = infile;
TFile *file = TFile::Open(filename);
// -------------------------------------------------------
// Tutorial starts here
// -------------------------------------------------------
// get the workspace out of the file
RooWorkspace *w = (RooWorkspace *)file->Get(workspaceName);
// get the modelConfig out of the file
ModelConfig *mc = (ModelConfig *)w->obj(modelConfigName);
// get the modelConfig out of the file
RooAbsData *data = w->data(dataName);
// -----------------------------
// now use the profile inspector
ProfileInspector p;
TList *list = p.GetListOfProfilePlots(*data, mc);
// now make plots
TCanvas *c1 = new TCanvas("c1", "ProfileInspectorDemo", 800, 200);
if (list->GetSize() > 4) {
double n = list->GetSize();
int nx = (int)sqrt(n);
int ny = TMath::CeilNint(n / nx);
nx = TMath::CeilNint(sqrt(n));
c1->Divide(ny, nx);
} else
c1->Divide(list->GetSize());
for (int i = 0; i < list->GetSize(); ++i) {
c1->cd(i + 1);
list->At(i)->Draw("al");
}
cout << endl;
}
TRangeDynCast
ROOT::Detail::TRangeCast< T, true > TRangeDynCast
TRangeDynCast is an adapter class that allows the typed iteration through a TCollection.
Definition TCollection.h:358
p
winID h TVirtualViewer3D TVirtualGLPainter p
Definition TGWin32VirtualGLProxy.cxx:51
data
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void data
Definition TGWin32VirtualXProxy.cxx:104
filename
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t Float_t Float_t Int_t Int_t UInt_t UInt_t Rectangle_t Int_t Int_t Window_t TString Int_t GCValues_t GetPrimarySelectionOwner GetDisplay GetScreen GetColormap GetNativeEvent const char const char dpyName wid window const char font_name cursor keysym reg const char only_if_exist regb h Point_t winding char text const char depth char const char Int_t count const char ColorStruct_t color const char filename
Definition TGWin32VirtualXProxy.cxx:232
gROOT
#define gROOT
Definition TROOT.h:411
gSystem
R__EXTERN TSystem * gSystem
Definition TSystem.h:572
RooAbsData
Abstract base class for binned and unbinned datasets.
Definition RooAbsData.h:57
RooStats::ModelConfig
< A class that holds configuration information for a model using a workspace as a store
Definition ModelConfig.h:34
RooStats::ProfileInspector
Utility class to plot conditional MLE of nuisance parameters vs.
Definition ProfileInspector.h:27
RooWorkspace
Persistable container for RooFit projects.
Definition RooWorkspace.h:43
TCanvas
The Canvas class.
Definition TCanvas.h:23
TDirectoryFile::Get
TObject * Get(const char *namecycle) override
Return pointer to object identified by namecycle.
Definition TDirectoryFile.cxx:953
TFile
A ROOT file is an on-disk file, usually with extension .root, that stores objects in a file-system-li...
Definition TFile.h:131
TFile::Open
static TFile * Open(const char *name, Option_t *option="", const char *ftitle="", Int_t compress=ROOT::RCompressionSetting::EDefaults::kUseCompiledDefault, Int_t netopt=0)
Create / open a file.
Definition TFile.cxx:3764
TList
A doubly linked list.
Definition TList.h:38
TSystem::AccessPathName
virtual Bool_t AccessPathName(const char *path, EAccessMode mode=kFileExists)
Returns FALSE if one can access a file using the specified access mode.
Definition TSystem.cxx:1307
c1
return c1
Definition legend1.C:41
n
const Int_t n
Definition legend1.C:16
RooFit
The namespace RooFit contains mostly switches that change the behaviour of functions of PDFs (or othe...
Definition CodegenImpl.h:67
RooStats
Namespace for the RooStats classes.
Definition CodegenImpl.h:61
TMath::CeilNint
Int_t CeilNint(Double_t x)
Returns the nearest integer of TMath::Ceil(x).
Definition TMath.h:685
Author
Kyle Cranmer

Definition in file StandardProfileInspectorDemo.C.